Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G108700.2 | Wheat | nucleus | 94.74 | 94.74 |
| TraesCS6A01G118800.2 | Wheat | nucleus | 80.99 | 81.23 |
| HORVU6Hr1G021570.1 | Barley | nucleus | 59.36 | 60.24 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 24.56 | 51.85 |
| Os02t0148500-01 | Rice | nucleus | 46.2 | 48.17 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 34.5 | 47.2 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 40.35 | 45.54 |
| Bra014292.1-P | Field mustard | nucleus | 30.7 | 40.38 |
| CDY46552 | Canola | nucleus | 30.41 | 39.85 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 33.33 | 38.13 |
| GSMUA_Achr10P... | Banana | nucleus | 35.96 | 37.85 |
| TraesCS4B01G065300.1 | Wheat | nucleus | 29.53 | 37.55 |
| AT1G51600.1 | Thale cress | nucleus | 32.75 | 37.09 |
| CDY50073 | Canola | nucleus | 30.41 | 36.11 |
| AT3G21175.1 | Thale cress | nucleus | 30.99 | 35.69 |
| CDY19576 | Canola | nucleus | 30.99 | 35.45 |
| TraesCS7B01G323600.1 | Wheat | nucleus | 39.77 | 34.87 |
| CDY52949 | Canola | nucleus | 29.82 | 34.46 |
| KRH44616 | Soybean | extracellular, vacuole | 33.33 | 34.13 |
| Bra031258.1-P | Field mustard | nucleus | 30.99 | 33.02 |
| Bra023900.1-P | Field mustard | nucleus | 31.58 | 29.75 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 31.58 | 29.43 |
| CDY27538 | Canola | nucleus | 31.58 | 27.98 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR010399 |
| InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 | ScanProsite:PS00344 |
| PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 | SMART:SM00401 | SMART:SM00979 |
| SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS6B01G146800 | EnsemblPlants:TraesCS6B01G146800.2 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| TIGR:cd00202 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:147677687..147680659
Molecular Weight (calculated)
36304.0 Da
IEP (calculated)
5.016
GRAVY (calculated)
-0.737
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGHHDASKP YQPRRGPERP PPQQPAEDEE AAAAAAAMAE VEAAAGAMEQ YEPHLEHGEE EEEEEEGEEE GEEEGEEGHG YAYDYVTGEA VPMDEEGAAA
101: AAHAHHGAAG PHGMEAGGAP QAPSNTLTLS FQGEVFVFES VSAEKVQAVL LLLGGRELGP GMGVGPSSSA SYSKRLNSHR MASLMRFREK RKERNFDKKI
201: RYSVRKEVAH RMQRHKGQFT SSKAKAEEAA AAANSDWGAV EGRPLSAPVC QHCGISSNNT PMMRRGPDGP RTLCNACGLA WANKGMMREV KGHTPLKVVP
301: PATDDAQNGV AEAPTAEQQH LALEAAPEAP VAPAPAANGH DS
101: AAHAHHGAAG PHGMEAGGAP QAPSNTLTLS FQGEVFVFES VSAEKVQAVL LLLGGRELGP GMGVGPSSSA SYSKRLNSHR MASLMRFREK RKERNFDKKI
201: RYSVRKEVAH RMQRHKGQFT SSKAKAEEAA AAANSDWGAV EGRPLSAPVC QHCGISSNNT PMMRRGPDGP RTLCNACGLA WANKGMMREV KGHTPLKVVP
301: PATDDAQNGV AEAPTAEQQH LALEAAPEAP VAPAPAANGH DS
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
Arabidopsis Description
GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.