Factsheet for Os02t0148500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0235700-01
Os02t0148500-01
Os02t0167700-01
Os02t0169800-01
Os03t0131900-01
Os05t0351500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	Os01t0235700-01	AT1G01260.1	21798944
AT1G51600.1	Os02t0167700-01	AT2G02560.1	21798944
AT1G51600.1	Os02t0169800-01	AT2G02560.1	21798944
AT1G51600.1	Os03t0131900-01	AT2G47450.1	21798944
AT1G51600.1	Os02t0148500-01	AT3G21175.1	21798944
AT1G51600.1	Os05t0351500-01	AT5G58575.1	21798944
AT3G21175.1	Os02t0148500-01	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04520_001	Banana	nucleus	30.79	62.35
GSMUA_Achr3P05620_001	Banana	nucleus	42.68	56.0
GSMUA_Achr9P13870_001	Banana	nucleus	47.56	51.49
TraesCS6A01G118800.2	Wheat	nucleus	50.91	48.97
HORVU6Hr1G021570.1	Barley	nucleus	50.0	48.66
TraesCS6B01G146800.2	Wheat	nucleus	48.17	46.2
TraesCS6D01G108700.2	Wheat	nucleus	47.87	45.91
VIT_09s0054g00440.t01	Wine grape	nucleus	39.94	43.81
CDY46552	Canola	nucleus	34.15	42.91
Bra014292.1-P	Field mustard	nucleus	33.84	42.69
GSMUA_Achr10P...	Banana	nucleus	42.07	42.46
CDY50073	Canola	nucleus	35.67	40.62
AT3G21175.1	Thale cress	nucleus	36.59	40.4
AT1G51600.1	Thale cress	nucleus	36.59	39.74
CDY19576	Canola	nucleus	35.98	39.46
CDY52949	Canola	nucleus	34.45	38.18
KRH44616	Soybean	extracellular, vacuole	38.41	37.72
Os03t0734900-00	Rice	nucleus	30.79	37.27
Bra031258.1-P	Field mustard	nucleus	35.98	36.76
Os03t0684000-01	Rice	nucleus	35.06	36.05
Bra023900.1-P	Field mustard	nucleus	34.76	31.41
CDY37312	Canola	cytosol, nucleus, plastid	35.06	31.34
CDY27538	Canola	nucleus	34.45	29.27

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:4328300	EMBL:AK068931	ProteinID:BAD13061.1	ProteinID:BAF07806.1
ProteinID:BAS76986.1	InterPro:CCT_domain	ncoils:Coil	EMBL:EU847015	GO:GO:0000977	GO:GO:0001085
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
EnsemblPlantsGene:Os02g0148500	EnsemblPlants:Os02t0148500-01	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	UniProt:Q6Z433
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000035040D	RefSeq:XP_015622990.1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

GATA TRANSCRIPTION FACTOR 17Similar to TIMING OF CAB 1 (Fragment). (Os02t0148500-01)

Coordinates

chr2:+:2664442..2668161

Molecular Weight (calculated)

34858.4 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.612

Length

328 amino acids

Sequence
(BLAST)

001: MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE YEGGEGVPMD ADASAAAVAG MDPHGEMVPV AGGEAGGGYP
101: HVASNTLTLS FQGEVYVFES VSAERVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF
201: TSSKSKAEEA TSVITSSEGS PNWGAVEGRP PSAAECHHCG ISAASTPMMR RGPDGPRTLC NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE
301: ATGVEQHNSA VEEAVSAANG HESQSGVA

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.