Factsheet for Os02t0169800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os02t0747400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os05t0150500-00
Os05t0193900-00
Os06t0226700-01
Os07t0129700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	Os02t0747400-01	AT3G47620.1	21798944
AT2G02560.1	Os06t0226700-01	AT3G47620.1	21798944
AT2G02560.1	Os05t0150500-00	AT3G62980.1	18550827
AT2G02560.1	Os01t0935300-02	AT4G02570.1	15208391
AT2G02560.1	Os05t0193900-00	AT4G02570.1	15208391
AT2G02560.1	Os01t0935300-02	AT4G02570.1	15208392
AT2G02560.1	Os05t0193900-00	AT4G02570.1	15208392
AT2G02560.1	Os01t0935300-02	AT4G02570.1	18550827
AT2G02560.1	Os05t0193900-00	AT4G02570.1	18550827
AT2G02560.1	Os03t0673000-00	AT4G08150.1	21798944
AT2G02560.1	Os03t0673500-00	AT4G08150.1	21798944
AT2G02560.1	Os03t0727000-02	AT4G08150.1	21798944
AT2G02560.1	Os03t0727200-00	AT4G08150.1	21798944
AT2G02560.1	Os03t0771500-01	AT4G08150.1	21798944
AT2G02560.1	Os03t0772100-00	AT4G08150.1	21798944
AT2G02560.1	Os07t0129700-01	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G010280.1	Barley	plastid	28.98	85.85
HORVU1Hr1G041480.1	Barley	cytosol	24.2	85.39
HORVU1Hr1G041490.1	Barley	cytosol	14.97	82.46
HORVU5Hr1G059250.1	Barley	cytosol	17.83	80.0
Os02t0167700-01	Rice	plasma membrane	92.68	23.89
EES06334	Sorghum	cytosol	83.44	21.49
HORVU2Hr1G005650.6	Barley	cytosol	82.48	21.25
TraesCS5A01G046900.1	Wheat	golgi	81.85	21.08
TraesCS5D01G057500.1	Wheat	cytosol	81.85	21.08
TraesCS5B01G051900.1	Wheat	cytosol	81.53	21.0
TraesCS2B01G051000.1	Wheat	cytosol, golgi	81.53	21.0
TraesCS2D01G036800.1	Wheat	cytosol	81.21	20.92
TraesCS2A01G037800.2	Wheat	cytosol, unclear	81.21	20.92
Zm00001d053813_P002	Maize	mitochondrion	82.8	20.47
GSMUA_Achr10P...	Banana	cytosol	73.57	18.77
VIT_12s0035g01840.t01	Wine grape	cytosol	71.34	18.39
KRH51281	Soybean	endoplasmic reticulum	69.75	18.0
Solyc01g103010.2.1	Tomato	cytosol	69.43	17.91
KRH01878	Soybean	endoplasmic reticulum	69.43	17.9
AT2G02560.1	Thale cress	cytosol	66.56	17.15
CDY09359	Canola	cytosol	66.24	17.09
Bra026586.1-P	Field mustard	cytosol	66.24	17.09
CDY41685	Canola	cytosol	66.56	16.99
CDY45206	Canola	cytosol	64.65	16.72
CDY03047	Canola	cytosol	64.97	16.63
Bra024815.1-P	Field mustard	cytosol	64.65	16.6
TraesCS5A01G409300.1	Wheat	cytosol	53.18	13.37
TraesCS5D01G419100.1	Wheat	nucleus	44.9	13.29
HORVU7Hr1G036210.1	Barley	endoplasmic reticulum, plastid	0.64	2.86
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	0.96	0.92
HORVU5Hr1G011280.4	Barley	cytosol, endoplasmic reticulum, peroxisome	0.64	0.31

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.8.1.5	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAH91549.1	ProteinID:BAS77190.1
UniProt:C7IY94	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010265
GO:GO:0016043	GO:GO:0016567	GO:GO:0019538	InterPro:IPR011989	EnsemblPlantsGene:Os02g0169800	EnsemblPlants:Os02t0169800-01
PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	SUPFAM:SSF48371	UniParc:UPI0001B66D10	SEG:seg	:

Description

Armadillo-like helical domain containing protein. (Os02t0169800-01)

Coordinates

chr2:+:3778039..3791798

Molecular Weight (calculated)

34503.2 Da

IEP (calculated)

4.312

GRAVY (calculated)

-0.058

Length

314 amino acids

Sequence
(BLAST)

001: RLNKEGFKAD QDIEPKLTTT VLQQLEDTSG EVSGLAVKCL APLVKKVGED SVVEMTNILC DKLLNGKDQH RDTASIALKT IIAEVTTTTL AEKILVSLAP
101: QLIKGATAGK SAEVKCECLD ILGDVLHRFG NLITKDHDCM LTALLSQLSS NQASVRKKSI SCIASLAACL SDDLLAKATF EVVQLLKNRS AKSEIARTNI
201: QMIGALSRSV GYRFGPHLAE VVPLLINYCT SASENDEELC EYSLQALESF MLRCPRDISP YCESILNLAL EYISYDPNFT DSMEEDTDDE AQDEEDDEYL
301: IDALTVIDKC YLFT

Best Arabidopsis Sequence Match ( AT2G02560.1 )
(BLAST)

0001: MANLQVSGIL EKFQMTGKDK DYRYMATSDL LNELNKDSFK IDLDLEVRLS SIILQQLDDV AGDVSGLAVK CLAPLVKKVG EERIVEMTNK LCDKLLHGKD
0101: QHRDTASIAL RTVVAQIAPT LAPSILVTLT PQMIGGISGQ GMSSGIKCEC LEIMCDVVQK YGSLMTDDHE KLLNTLLLQL GCNQATVRKK TVTCIASLAS
0201: SLSDDLLAKA TVEVVKNLSN RNAKSEITRT NIQMIGALCR AVGYRFGTHL GNTVPVLINY CTSASENDEE LREYSLQALE SFLLRCPRDI SPYCDEILNL
0301: TLEYISYDPN FTDNMEEDTD NETLEDEEDD ESANEYTDDE DASWKVRRAA AKCLAGLIVS RSEMLTKVYQ EACPKLIDRF KEREENVKMD VFNTFIDLLR
0401: QTGNVTKGQT DTDESSPKWL LKQEVSKIVK SINRQLREKS VKTKVGAFSV LRELVVVLPD CLADHIGSLV PGIERALNDK SSTSNLKIEA LVFTKLVLAS
0501: HAPPVFHPYI KALSSPVLAA VGERYYKVTA EALRVCGELV RVVRPSTAGM GFDFKPFVHP IYNAIMSRLT NQDQDQEVKE CAITCMGLVI STFGDQLRAE
0601: LPSCLPVLVD RMGNEITRLT AVKAFSVIAT SPLHINLSCV LDHLIAELTG FLRKANRVLR QATLITMNTL VTAYGDKIGS EAYEVILVEL SSLISVSDLH
0701: MTALALELCC TLMTGKSCSE NISLAVRNKV LPQALTLVKS PLLQGQALLD LQKFFEALVY HANTSFYTLL ESLLSCAKPS PQSGGVPKQA LYSIAQCVAV
0801: LCLAAGDKNC SSTVKMLMEI LKDDSGTNSA KQHLALLSLG EIGRRKDLSA HAGIETIVIE SFQSPFEEIK SAASYALGNI AVGNLSNYLP FILDQIDNQQ
0901: KKQYILLHSL KEVIVRQSVD KADFQNSSVE KILALLFNHC ESEEEGVRNV VAECLGKMAL IEPEKLVPAL QVRTTSPAAF TRATVVTAVK YSVVERPEKL
1001: DEIIFPQISS FLMLIKDGDR HVRRAAVSAL STFAHYKPNL IKGLLPELLP LLYDQTVIKK ELIRTVDLGP FKHVVDDGLE LRKAAFECVF TLVDSCLDQV
1101: NPSSFIVPFL KSGLEDHYDL KMLCHLILSL LADKCPSAVL AVLDSLVEPL HKTISFKPKQ DAVKQEHDRN EDMIRSALRA ISSLDRINGV DYSHKFKGLM
1201: GDMKRSVPLW EKFQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.