Factsheet for HORVU5Hr1G011280.4

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

peroxisome 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	endoplasmic reticulum, peroxisome
MultiLoc:	peroxisome
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G021550.4
HORVU2Hr1G061320.3
HORVU3Hr1G098530.4
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU5Hr1G098570.6
HORVU5Hr1G103580.2
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT2G02560.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944
AT2G02560.1	HORVU1Hr1G021550.4	AT3G62980.1	18550827
AT2G02560.1	HORVU3Hr1G098530.4	AT4G02570.1	15208391
AT2G02560.1	HORVU3Hr1G098530.4	AT4G02570.1	15208392
AT2G02560.1	HORVU3Hr1G098530.4	AT4G02570.1	18550827
AT2G02560.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT2G02560.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT2G02560.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT2G02560.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT2G02560.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT2G02560.1	HORVU5Hr1G103580.2	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G036210.1	Barley	endoplasmic reticulum, plastid	10.06	91.43
TraesCS5D01G057500.1	Wheat	cytosol	98.43	51.35
TraesCS5B01G051900.1	Wheat	cytosol	98.43	51.35
TraesCS5A01G046900.1	Wheat	golgi	98.27	51.27
HORVU2Hr1G005650.6	Barley	cytosol	94.81	49.47
Os02t0167700-01	Rice	plasma membrane	93.4	48.77
EES06334	Sorghum	cytosol	92.3	48.15
Zm00001d053813_P002	Maize	mitochondrion	91.19	45.67
GSMUA_Achr10P...	Banana	cytosol	86.32	44.6
VIT_12s0035g01840.t01	Wine grape	cytosol	82.23	42.94
Solyc01g103010.2.1	Tomato	cytosol	80.66	42.15
CDY09359	Canola	cytosol	76.89	40.18
Bra026586.1-P	Field mustard	cytosol	76.89	40.18
CDY45206	Canola	cytosol	76.57	40.12
AT2G02560.1	Thale cress	cytosol	76.26	39.79
CDY41685	Canola	cytosol	76.73	39.67
Bra024815.1-P	Field mustard	cytosol	75.94	39.49
CDY03047	Canola	cytosol	75.79	39.28
HORVU2Hr1G069270.2	Barley	mitochondrion, plastid	9.28	35.98
Os02t0169800-01	Rice	cytosol, plasma membrane	0.31	0.64
HORVU0Hr1G010280.1	Barley	plastid	0.0	0.0
HORVU1Hr1G041480.1	Barley	cytosol	0.0	0.0
HORVU1Hr1G041490.1	Barley	cytosol	0.0	0.0
HORVU5Hr1G059250.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU5Hr1G011280.4	EnsemblPlantsGene:HORVU5Hr1G011280	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:TATA-bd_TIP120	PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	PFAM:PF08623
SEG:seg	SUPFAM:SSF48371	UniParc:UPI000B467D3E	UniProt:A0A287QCB2	MapMan:19.2.2.8.1.5	:

Description

No Description!

Coordinates

chrchr5H:+:29329592..29342605

Molecular Weight (calculated)

69336.6 Da

IEP (calculated)

6.991

GRAVY (calculated)

0.149

Length

636 amino acids

Sequence
(BLAST)

001: MSLVIATFGD GLQRELPSCL PILVDRMGNE ITRLTAVKAF AVIANSPLRI DLSCVLDHVI SELTAFLRKA NRALRQATLG TLNSLVVTYG GQIGSSSYET
101: IIAELSTLIS DIDLHMAALA LELCCTIMVD RRSIKNVGLA VRHKVLPQAL ILIRSALLQG QALQALQKFF ASLVQSANTS FETLLDSLIS TAKPSQSGGL
201: SKQALSSIAQ CVAVLCLAAG DQKCASTVEM LKGILNDDSS TNSAKQHMAL LCLGEIGRRK DLSNHVQIEN IVIESFQSPF EEIKSAASYA LGNIAVGNLS
301: KYLPFILDQI DNQQKKQYLL LHSLKEVIAR QSVDHTGQSE LQDSNIVKIL ALLFNHCESE EEGVRNVVAE CLGKIALIEP NKLIPALKER SCSPAANTRA
401: TVAIAIKYSI VERSGKIDAI MYSEISTFLM LIKDGDRHVR RAAVLALSTA AHNKPNLIEG LLPELLPLLY DQTVVKQELI RTVDLGPFKH VVDDGLELRK
501: AAFECVDTLL DSCLDQLNPS SFIVPFLLSG LGDHYDVKMP CHLILSKLAD KCPSAVLAVL DSLVEPLEKT IVHRPKGDAV KQEIDRNEDM IRSALRAIAA
601: LSRISGSDYS MKFKNLMNKI TSTSSLAEKY NSVRSE

Best Arabidopsis Sequence Match ( AT2G02560.1 )
(BLAST)

0001: MANLQVSGIL EKFQMTGKDK DYRYMATSDL LNELNKDSFK IDLDLEVRLS SIILQQLDDV AGDVSGLAVK CLAPLVKKVG EERIVEMTNK LCDKLLHGKD
0101: QHRDTASIAL RTVVAQIAPT LAPSILVTLT PQMIGGISGQ GMSSGIKCEC LEIMCDVVQK YGSLMTDDHE KLLNTLLLQL GCNQATVRKK TVTCIASLAS
0201: SLSDDLLAKA TVEVVKNLSN RNAKSEITRT NIQMIGALCR AVGYRFGTHL GNTVPVLINY CTSASENDEE LREYSLQALE SFLLRCPRDI SPYCDEILNL
0301: TLEYISYDPN FTDNMEEDTD NETLEDEEDD ESANEYTDDE DASWKVRRAA AKCLAGLIVS RSEMLTKVYQ EACPKLIDRF KEREENVKMD VFNTFIDLLR
0401: QTGNVTKGQT DTDESSPKWL LKQEVSKIVK SINRQLREKS VKTKVGAFSV LRELVVVLPD CLADHIGSLV PGIERALNDK SSTSNLKIEA LVFTKLVLAS
0501: HAPPVFHPYI KALSSPVLAA VGERYYKVTA EALRVCGELV RVVRPSTAGM GFDFKPFVHP IYNAIMSRLT NQDQDQEVKE CAITCMGLVI STFGDQLRAE
0601: LPSCLPVLVD RMGNEITRLT AVKAFSVIAT SPLHINLSCV LDHLIAELTG FLRKANRVLR QATLITMNTL VTAYGDKIGS EAYEVILVEL SSLISVSDLH
0701: MTALALELCC TLMTGKSCSE NISLAVRNKV LPQALTLVKS PLLQGQALLD LQKFFEALVY HANTSFYTLL ESLLSCAKPS PQSGGVPKQA LYSIAQCVAV
0801: LCLAAGDKNC SSTVKMLMEI LKDDSGTNSA KQHLALLSLG EIGRRKDLSA HAGIETIVIE SFQSPFEEIK SAASYALGNI AVGNLSNYLP FILDQIDNQQ
0901: KKQYILLHSL KEVIVRQSVD KADFQNSSVE KILALLFNHC ESEEEGVRNV VAECLGKMAL IEPEKLVPAL QVRTTSPAAF TRATVVTAVK YSVVERPEKL
1001: DEIIFPQISS FLMLIKDGDR HVRRAAVSAL STFAHYKPNL IKGLLPELLP LLYDQTVIKK ELIRTVDLGP FKHVVDDGLE LRKAAFECVF TLVDSCLDQV
1101: NPSSFIVPFL KSGLEDHYDL KMLCHLILSL LADKCPSAVL AVLDSLVEPL HKTISFKPKQ DAVKQEHDRN EDMIRSALRA ISSLDRINGV DYSHKFKGLM
1201: GDMKRSVPLW EKFQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.