Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G057500.1 | Wheat | cytosol | 98.85 | 98.85 |
| TraesCS5A01G046900.1 | Wheat | golgi | 98.52 | 98.52 |
| HORVU5Hr1G011280.4 | Barley | cytosol, endoplasmic reticulum, peroxisome | 51.35 | 98.43 |
| HORVU1Hr1G041490.1 | Barley | cytosol | 4.51 | 96.49 |
| HORVU1Hr1G041480.1 | Barley | cytosol | 6.97 | 95.51 |
| HORVU0Hr1G010280.1 | Barley | plastid | 8.29 | 95.28 |
| TraesCS2B01G051000.1 | Wheat | cytosol, golgi | 94.59 | 94.59 |
| Os02t0167700-01 | Rice | plasma membrane | 92.45 | 92.53 |
| HORVU7Hr1G036210.1 | Barley | endoplasmic reticulum, plastid | 5.25 | 91.43 |
| EES06334 | Sorghum | cytosol | 91.3 | 91.3 |
| Zm00001d053813_P002 | Maize | mitochondrion | 90.4 | 86.77 |
| GSMUA_Achr10P... | Banana | cytosol | 83.84 | 83.02 |
| Os02t0169800-01 | Rice | cytosol, plasma membrane | 21.0 | 81.53 |
| VIT_12s0035g01840.t01 | Wine grape | cytosol | 80.89 | 80.95 |
| KRH51281 | Soybean | endoplasmic reticulum | 80.23 | 80.36 |
| KRH01878 | Soybean | endoplasmic reticulum | 79.98 | 80.05 |
| Solyc01g103010.2.1 | Tomato | cytosol | 78.1 | 78.23 |
| CDY09359 | Canola | cytosol | 75.88 | 76.01 |
| Bra026586.1-P | Field mustard | cytosol | 75.88 | 76.01 |
| AT2G02560.1 | Thale cress | cytosol | 75.47 | 75.47 |
| CDY41685 | Canola | cytosol | 75.72 | 75.04 |
| CDY45206 | Canola | cytosol | 74.57 | 74.88 |
| Bra024815.1-P | Field mustard | cytosol | 74.82 | 74.57 |
| CDY03047 | Canola | cytosol | 74.98 | 74.49 |
| KRH75237 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 19.03 | 71.38 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G051900.1 | EnsemblPlantsGene:TraesCS5B01G051900 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:TATA-bd_TIP120 |
| PANTHER:PTHR12696 | PANTHER:PTHR12696:SF0 | PFAM:PF08623 | SEG:seg | SUPFAM:SSF48371 | MapMan:19.2.2.8.1.5 |
Description
No Description!
Coordinates
chr5B:-:56563058..56572664
Molecular Weight (calculated)
134279.0 Da
IEP (calculated)
6.035
GRAVY (calculated)
-0.016
Length
1219 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANMNITGIL EKMTGKDKDY RYMATSDLLS ELNKESFKAD QDLESKLTNI ILQQLEDASG DVSGLAVKCL APLVKKVSED RVVEMTDKLC DKLLNGKEQH
0101: RDIASIALKT IIVEVTTASL SEKILVSLAP QLINGVTSGK SAEIKCECLD ILGDVLHRFG NVITKDHAFM LTALLTQLSS TQASVRKKSV SCIASLAPCL
0201: SDDLLANATS EVVLLLKNKR AKSEITRTNI QMIGALSRSV GYRFGPHLAE AVPLLISYCT SASENDEELR EYSLQALESF MLRCPRDISP YCDGILNLAL
0301: EYVSYDPNYT DSMEEDTDDE VQDEEDDDES ANEYTDDEDA SWKVRRASAK CLSAIIVSRP QMLSKMYQEA CPKLIDRFRE REENVKMDIF NTFIELLRQT
0401: GNVTKGQGDI DESSPRWLLK QEVPKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPDCL ADHFGSLVPG IEKALNDKSS TSNLKIEALA FARIVMASHS
0501: PFVFHPYIQA LSGPILSAIG DRYYKVTAEA LRVCGELVRV LRPNFEARSI DFRPYVSPIY KAILGRLANQ DQDQEVKECA ISCMSLVIAT FGDGLQRELP
0601: SCLPILVDRM GNEITRLTAV KAFAVIANSP LRIDLSCVLD HVVSELTAFL RKANRALRQA TLGTLNSLVV TYGGQIGSSS YETIIAELST LISDIDLHMA
0701: ALALELCCTI MVDRRSIKNV GLAVRHKVLP QALILIRSAL LQGQALQALQ KFFASLVQSA NTSFETLLDS LISTAKPSQS GSLSKQALSS IAQCVAVLCL
0801: AAGDQKCAST VEMLKGILND DSSTNSAKQH MALLCLGEIG RRKDLSNHVQ IENIAIESFQ SPFEEIKSAA SYALGNIAVG NLSKYLPFIL DQIDNQQKKQ
0901: YLLLHSLKEV IARQSVDHTG QSELQDSNIV KILALLFNHC ESEEEGVRNV VAECLGKIAL IEPNKLIPAL KERTCSPAAN TRATVAIAIK YSIVERPGKI
1001: DAIMYSEIST FLMLIKDSDR HVRRAAVLAL STAAHNKPNL IKGLLPELLP LLYDQTVVKQ ELIRTVDLGP FKHVVDDGLE LRKAAFECVD TLLDNCLDQL
1101: NPSSFIVPFL LSGLGDHYDV KMPCHLILSK LADKCPSAVL AVLDSLVEPL EKTIVHRPKG DAVKQEIDRN EDMIRSALRA IAALSRISGS DYSMKFKNLM
1201: NKITATPSLA EKYNSVRSE
0101: RDIASIALKT IIVEVTTASL SEKILVSLAP QLINGVTSGK SAEIKCECLD ILGDVLHRFG NVITKDHAFM LTALLTQLSS TQASVRKKSV SCIASLAPCL
0201: SDDLLANATS EVVLLLKNKR AKSEITRTNI QMIGALSRSV GYRFGPHLAE AVPLLISYCT SASENDEELR EYSLQALESF MLRCPRDISP YCDGILNLAL
0301: EYVSYDPNYT DSMEEDTDDE VQDEEDDDES ANEYTDDEDA SWKVRRASAK CLSAIIVSRP QMLSKMYQEA CPKLIDRFRE REENVKMDIF NTFIELLRQT
0401: GNVTKGQGDI DESSPRWLLK QEVPKIVKSI NRQLREKSIK TKVGAFSVLK ELVVVLPDCL ADHFGSLVPG IEKALNDKSS TSNLKIEALA FARIVMASHS
0501: PFVFHPYIQA LSGPILSAIG DRYYKVTAEA LRVCGELVRV LRPNFEARSI DFRPYVSPIY KAILGRLANQ DQDQEVKECA ISCMSLVIAT FGDGLQRELP
0601: SCLPILVDRM GNEITRLTAV KAFAVIANSP LRIDLSCVLD HVVSELTAFL RKANRALRQA TLGTLNSLVV TYGGQIGSSS YETIIAELST LISDIDLHMA
0701: ALALELCCTI MVDRRSIKNV GLAVRHKVLP QALILIRSAL LQGQALQALQ KFFASLVQSA NTSFETLLDS LISTAKPSQS GSLSKQALSS IAQCVAVLCL
0801: AAGDQKCAST VEMLKGILND DSSTNSAKQH MALLCLGEIG RRKDLSNHVQ IENIAIESFQ SPFEEIKSAA SYALGNIAVG NLSKYLPFIL DQIDNQQKKQ
0901: YLLLHSLKEV IARQSVDHTG QSELQDSNIV KILALLFNHC ESEEEGVRNV VAECLGKIAL IEPNKLIPAL KERTCSPAAN TRATVAIAIK YSIVERPGKI
1001: DAIMYSEIST FLMLIKDSDR HVRRAAVLAL STAAHNKPNL IKGLLPELLP LLYDQTVVKQ ELIRTVDLGP FKHVVDDGLE LRKAAFECVD TLLDNCLDQL
1101: NPSSFIVPFL LSGLGDHYDV KMPCHLILSK LADKCPSAVL AVLDSLVEPL EKTIVHRPKG DAVKQEIDRN EDMIRSALRA IAALSRISGS DYSMKFKNLM
1201: NKITATPSLA EKYNSVRSE
0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
Arabidopsis Description
CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.