CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96377
KRG96405
KRH03466
KRH11182
KRH21072
KRH21073
KRH31921
KRH42547
KRH54542
KRH56919
KRH58640
KRH61471
KRH63357
KRH68108
KRH68142
KRH71533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	KRH03466	AT3G47620.1	21798944
AT2G02560.1	KRH54542	AT3G47620.1	21798944
AT2G02560.1	KRH56919	AT3G47620.1	21798944
AT2G02560.1	KRH63357	AT3G47620.1	21798944
AT2G02560.1	KRG96377	AT3G62980.1	18550827
AT2G02560.1	KRH31921	AT3G62980.1	18550827
AT2G02560.1	KRH68108	AT3G62980.1	18550827
AT2G02560.1	KRH71533	AT3G62980.1	18550827
AT2G02560.1	KRG96405	AT4G02570.1	15208391
AT2G02560.1	KRH68142	AT4G02570.1	15208391
AT2G02560.1	KRG96405	AT4G02570.1	15208392
AT2G02560.1	KRH68142	AT4G02570.1	15208392
AT2G02560.1	KRG96405	AT4G02570.1	18550827
AT2G02560.1	KRH68142	AT4G02570.1	18550827
AT2G02560.1	KRH61471	AT4G08150.1	21798944
AT2G02560.1	KRH11182	AT5G46210.1	16844902
AT2G02560.1	KRH21072	AT5G46210.1	16844902
AT2G02560.1	KRH21073	AT5G46210.1	16844902
AT2G02560.1	KRH42547	AT5G46210.1	16844902
AT2G02560.1	KRH58640	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51281	Soybean	endoplasmic reticulum	87.08	23.25
KRH01878	Soybean	endoplasmic reticulum	87.08	23.23
VIT_12s0035g01840.t01	Wine grape	cytosol	81.54	21.76
Solyc01g103010.2.1	Tomato	cytosol	76.92	20.54
HORVU2Hr1G069270.2	Barley	mitochondrion, plastid	10.15	20.12
TraesCS5D01G419100.1	Wheat	nucleus	65.54	20.08
GSMUA_Achr10P...	Banana	cytosol	75.69	19.98
AT2G02560.1	Thale cress	cytosol	74.15	19.77
CDY09359	Canola	cytosol	73.85	19.72
Bra026586.1-P	Field mustard	cytosol	73.85	19.72
CDY03047	Canola	cytosol	73.85	19.56
CDY45206	Canola	cytosol	72.92	19.52
CDY41685	Canola	cytosol	73.85	19.51
Bra024815.1-P	Field mustard	cytosol	73.23	19.46
Os02t0167700-01	Rice	plasma membrane	72.62	19.38
EES06334	Sorghum	cytosol	72.31	19.28
TraesCS5D01G057500.1	Wheat	cytosol	71.69	19.11
TraesCS2D01G036800.1	Wheat	cytosol	71.38	19.03
TraesCS5B01G051900.1	Wheat	cytosol	71.38	19.03
TraesCS2B01G051000.1	Wheat	cytosol, golgi	70.77	18.87
Zm00001d053813_P002	Maize	mitochondrion	71.69	18.35
Zm00001d046662_P001	Maize	cytosol	6.77	5.6
Zm00001d050298_P001	Maize	cytosol	8.0	5.36
TraesCS5A01G409400.1	Wheat	cytosol, extracellular	0.92	2.14
Zm00001d027974_P002	Maize	plastid	3.08	1.8
Zm00001d049167_P001	Maize	plastid	0.92	1.08
Os02t0169800-01	Rice	cytosol, plasma membrane	0.92	0.96

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.8.1.5	EMBL:ACUP02000170	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_01G072200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010265	GO:GO:0016043
GO:GO:0016567	GO:GO:0019538	InterPro:IPR011989	UniProt:K7K2D1	EnsemblPlants:KRH75237	ProteinID:KRH75237
ProteinID:KRH75237.1	PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	SUPFAM:SSF48371	UniParc:UPI0002960704	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:13295852..13299564

Molecular Weight (calculated)

35653.7 Da

IEP (calculated)

9.006

GRAVY (calculated)

0.170

Length

325 amino acids

Sequence
(BLAST)

001: MIALALELCC TLMGDKRSNQ SIGLAVRNKV LPQALTLIKS SLLQGQALSA LQNVFAALVY SANTSIDYVL ESLFASAKPS PQSGGIAKQA LHSIAQCVTI
101: LCLVAGDQKC SSTVKMLTDI LKDDNSSNSV SFSLQRKDLS TYAHIENIVI ESFQTPFEEI KSAASYALGN IVVGNLPKYL PFILDQIDNQ QKKQYLLPHS
201: LKEVIVRQSV DKAKFQESSV EKILNLLFNH CESEEERVCN VMPVKLIPAL KVRTTSPSAF TRATVVIAVK YSIDNNRVVI MSMQHVRRAA VLAISTLAHN
301: KPNLIKGLLP DLLPLLYDQT IVKVT

Best Arabidopsis Sequence Match ( AT2G02560.2 )
(BLAST)

0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.