Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024815.1-P | Field mustard | cytosol | 98.43 | 97.71 |
| CDY03047 | Canola | cytosol | 97.28 | 96.25 |
| CDY09359 | Canola | cytosol | 95.47 | 95.23 |
| CDY41685 | Canola | cytosol | 95.39 | 94.15 |
| AT2G02560.1 | Thale cress | cytosol | 93.9 | 93.52 |
| KRH51281 | Soybean | endoplasmic reticulum | 81.63 | 81.43 |
| VIT_12s0035g01840.t01 | Wine grape | cytosol | 81.22 | 80.95 |
| KRH01878 | Soybean | endoplasmic reticulum | 81.05 | 80.79 |
| Solyc01g103010.2.1 | Tomato | cytosol | 78.83 | 78.64 |
| HORVU5Hr1G011280.4 | Barley | cytosol, endoplasmic reticulum, peroxisome | 40.12 | 76.57 |
| EES06334 | Sorghum | cytosol | 75.95 | 75.64 |
| GSMUA_Achr10P... | Banana | cytosol | 76.61 | 75.55 |
| Os02t0167700-01 | Rice | plasma membrane | 75.45 | 75.21 |
| TraesCS5D01G057500.1 | Wheat | cytosol | 75.04 | 74.73 |
| TraesCS5A01G046900.1 | Wheat | golgi | 74.96 | 74.65 |
| TraesCS5B01G051900.1 | Wheat | cytosol | 74.88 | 74.57 |
| HORVU2Hr1G005650.6 | Barley | cytosol | 74.3 | 74.0 |
| TraesCS2D01G036800.1 | Wheat | cytosol | 74.22 | 73.91 |
| TraesCS2A01G037800.2 | Wheat | cytosol, unclear | 74.14 | 73.83 |
| TraesCS2B01G051000.1 | Wheat | cytosol, golgi | 74.05 | 73.75 |
| KRH75237 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 19.52 | 72.92 |
| HORVU0Hr1G010280.1 | Barley | plastid | 6.1 | 69.81 |
| TraesCS5D01G419100.1 | Wheat | nucleus | 57.66 | 65.98 |
| HORVU5Hr1G059250.1 | Barley | cytosol | 3.79 | 65.71 |
| Os02t0169800-01 | Rice | cytosol, plasma membrane | 16.72 | 64.65 |
| HORVU1Hr1G041480.1 | Barley | cytosol | 4.61 | 62.92 |
| HORVU7Hr1G036210.1 | Barley | endoplasmic reticulum, plastid | 3.62 | 62.86 |
| Zm00001d049167_P001 | Maize | plastid | 13.76 | 60.29 |
| TraesCS5A01G409300.1 | Wheat | cytosol | 47.86 | 46.52 |
| HORVU1Hr1G041490.1 | Barley | cytosol | 1.98 | 42.11 |
| Zm00001d050298_P001 | Maize | cytosol | 15.16 | 37.94 |
| Zm00001d027974_P002 | Maize | plastid | 16.64 | 36.27 |
| Zm00001d046662_P001 | Maize | cytosol | 5.02 | 15.52 |
Protein Annotations
| EnsemblPlants:CDY45206 | EnsemblPlantsGene:GSBRNA2T00081635001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:TATA-bd_TIP120 |
| PANTHER:PTHR12696 | PANTHER:PTHR12696:SF0 | PFAM:PF08623 | ProteinID:CDY45206 | ProteinID:CDY45206.1 | SEG:seg |
| SUPFAM:SSF48371 | UniParc:UPI0004EE2E4C | UniProt:A0A078I5M0 | MapMan:19.2.2.8.1.5 | : | : |
Description
BnaA06g34100DBnaA06g34100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5M0]
Coordinates
chrLK032617:-:206587..214008
Molecular Weight (calculated)
134606.0 Da
IEP (calculated)
5.847
GRAVY (calculated)
-0.003
Length
1214 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANLQLSGII EKMTGKDKDY RYMATSDLLN ELNKDSFKLD SDLEMRLSSI ILQQLDDVSG LAVKCLAPLV KKVGEERVVE MTNNLCDKLL HGKDQHRDTA
0101: SIALRTVVAQ VAPSLAPSIL VTLTPLMIGG ISGQEMSQGI KCECLEIMCD VVQKYGSLMA DDHEKLLNTL LLQLDCNQAT VRKKTVTCIA SLASSLSDDL
0201: LAKATVKVVK NLSNKNAKSE ITRTNIQMIG AISRAVGYRF GTHLGNTVPV LIDYCTSASE NDEELREYSL QALESFLLRC PRDISPYCDE ILNLTLEYIC
0301: YDPNFTDNMD EDTDDETPED EDDDESANEY TDDEDASWKV RRAAAKCLAG LIVSRSEMIS KVYQEACPKL IDRFKEREEN VKMDVFNTFI DLLRQTGNVT
0401: KGQTDTDESR QIFCPFHSII SKIVKSINRQ LREKSVKTKV GAFSVLRELV VVLPDCLADH IGSLVPGIER ALNDKSSTSN LKIEALVFTK LVLASHAPPV
0501: FHPYIKALSS PVLAAVGERY YKVTAEALRV CGELVRVVRP STQSIGFDFK PFVHPIYNAI MSRLTNQDQD QEVKECAITC MGLVISTFGD ELRKELPSCL
0601: PVLVDRMGNE ITRLTAVKAF AVIATSPLHI DLSCVLVNLI AELTGFLRKA NRVLRQATLI TMNTLVTAYG DKIVSDAYEV IVVELSSLIS VSDLHMTALA
0701: LELCCTLMTG KSCSENISLA VRNKVLPQAL TLVKSPLLQG QALLALQGFF EALVYHANTS FYTLLDSLLS CAKPSPQSGG VPKQALYSIA QCVAVLCLAA
0801: GDKNCSSTVK MLMEILKDDS GTNTAKQHLA LLSLGEIGRR KDLSAHADIE TIVIESFQSP FEEIKSAASY ALGNIAVGNL PNYLPFILNQ IDNQQKKQYI
0901: LLHSLKEVIV RQSVDKADFQ NSSVEKILAL LFNHCESEEE GVRNVVAECL GKMALIEPEK LVPALKVRTT SQAAFTRATV VTAVKYSVVE RPEKLDEIIF
1001: PEISSFLMLI KDGDRHVRRA AVSALSTFAH YKPNLIKGLL PELLPLLYDQ TVIKKELIRT VDLGPFKHVV DDGLELRKAA FECVFTLLDS CLDQLNPSSF
1101: IIPFLKSGLE DHYDLKMLCH LILSLLADKC PSAVLAVLDS LVEPLQKTIN FKPKQDAVKQ EHDRNEDMIR SALRAISSLD RISGVDYSHK FKSLMADMKR
1201: SERLWGKYQT IRNE
0101: SIALRTVVAQ VAPSLAPSIL VTLTPLMIGG ISGQEMSQGI KCECLEIMCD VVQKYGSLMA DDHEKLLNTL LLQLDCNQAT VRKKTVTCIA SLASSLSDDL
0201: LAKATVKVVK NLSNKNAKSE ITRTNIQMIG AISRAVGYRF GTHLGNTVPV LIDYCTSASE NDEELREYSL QALESFLLRC PRDISPYCDE ILNLTLEYIC
0301: YDPNFTDNMD EDTDDETPED EDDDESANEY TDDEDASWKV RRAAAKCLAG LIVSRSEMIS KVYQEACPKL IDRFKEREEN VKMDVFNTFI DLLRQTGNVT
0401: KGQTDTDESR QIFCPFHSII SKIVKSINRQ LREKSVKTKV GAFSVLRELV VVLPDCLADH IGSLVPGIER ALNDKSSTSN LKIEALVFTK LVLASHAPPV
0501: FHPYIKALSS PVLAAVGERY YKVTAEALRV CGELVRVVRP STQSIGFDFK PFVHPIYNAI MSRLTNQDQD QEVKECAITC MGLVISTFGD ELRKELPSCL
0601: PVLVDRMGNE ITRLTAVKAF AVIATSPLHI DLSCVLVNLI AELTGFLRKA NRVLRQATLI TMNTLVTAYG DKIVSDAYEV IVVELSSLIS VSDLHMTALA
0701: LELCCTLMTG KSCSENISLA VRNKVLPQAL TLVKSPLLQG QALLALQGFF EALVYHANTS FYTLLDSLLS CAKPSPQSGG VPKQALYSIA QCVAVLCLAA
0801: GDKNCSSTVK MLMEILKDDS GTNTAKQHLA LLSLGEIGRR KDLSAHADIE TIVIESFQSP FEEIKSAASY ALGNIAVGNL PNYLPFILNQ IDNQQKKQYI
0901: LLHSLKEVIV RQSVDKADFQ NSSVEKILAL LFNHCESEEE GVRNVVAECL GKMALIEPEK LVPALKVRTT SQAAFTRATV VTAVKYSVVE RPEKLDEIIF
1001: PEISSFLMLI KDGDRHVRRA AVSALSTFAH YKPNLIKGLL PELLPLLYDQ TVIKKELIRT VDLGPFKHVV DDGLELRKAA FECVFTLLDS CLDQLNPSSF
1101: IIPFLKSGLE DHYDLKMLCH LILSLLADKC PSAVLAVLDS LVEPLQKTIN FKPKQDAVKQ EHDRNEDMIR SALRAISSLD RISGVDYSHK FKSLMADMKR
1201: SERLWGKYQT IRNE
0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
Arabidopsis Description
CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.