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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026812.1-P Field mustard nucleus 98.84 98.84
CDY33749 Canola nucleus 98.84 98.84
AT1G14687.1 Thale cress nucleus 82.56 84.52
VIT_01s0011g06360.t01 Wine grape nucleus 37.79 36.11
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078CXZ3EnsemblPlants:CDX81662ProteinID:CDX81662ProteinID:CDX81662.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00136580001
InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456PFAM:PD125774PFAM:PF04770PFscan:PS51523
PANTHER:PTHR31948PANTHER:PTHR31948:SF16SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0004EB827B
InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::::
Description
BnaC08g39390D
Coordinates
chrLK031826:+:248224..248742
Molecular Weight (calculated)
20318.0 Da
IEP (calculated)
9.438
GRAVY (calculated)
-1.024
Length
172 amino acids
Sequence
(BLAST)
001: MQSSCLYKEC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IEVQPSGQVT RARFPFTSLR RVKQLARLKW KAAAEDREEQ EEQEEEDTEE
101: TSTEERMTVK RRRKSKFTAE QREAMRDYAA KLGWTLKDKR AVREEISIFC ERIGVTRYLF KTWVNNNKKF YH
Best Arabidopsis Sequence Match ( AT1G14687.1 )
(BLAST)
001: MQSTCVYREC MRNHAAKLGS YAIDGCREYS QPSTGDLCVA CGCHRSYHRR IDVISSPQIN HTRFPFTSLR RVKQLARLKW KTAEERNEEE EDDTEETSTE
101: EKMTVQRRRK SKFTAEQREA MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH
Arabidopsis Description
ZHD14ZHD14 [Source:UniProtKB/TrEMBL;Acc:A0A178W745]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.