Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004399.1-P | Field mustard | nucleus | 99.13 | 99.13 |
| CDY01760 | Canola | nucleus | 97.84 | 88.28 |
| CDY44079 | Canola | nucleus | 89.18 | 80.78 |
| CDY28566 | Canola | nucleus | 88.74 | 80.39 |
| AT1G69600.1 | Thale cress | nucleus | 81.82 | 78.1 |
| CDY69628 | Canola | nucleus | 41.99 | 54.19 |
| CDX88760 | Canola | nucleus | 41.13 | 52.49 |
| CDX81897 | Canola | mitochondrion | 16.02 | 42.05 |
| CDY26722 | Canola | mitochondrion | 15.58 | 40.91 |
| CDY21695 | Canola | mitochondrion | 15.58 | 40.91 |
| CDY19248 | Canola | mitochondrion | 15.58 | 40.91 |
| CDX83807 | Canola | mitochondrion | 15.15 | 39.77 |
| CDX96695 | Canola | mitochondrion | 14.72 | 38.64 |
| CDY34299 | Canola | nucleus | 36.36 | 37.33 |
| CDX73105 | Canola | mitochondrion | 15.15 | 37.23 |
| CDX96558 | Canola | mitochondrion | 15.15 | 37.23 |
| CDY08945 | Canola | nucleus | 33.77 | 37.14 |
| CDX68172 | Canola | mitochondrion | 15.58 | 37.11 |
| CDX85849 | Canola | mitochondrion | 15.58 | 37.11 |
| CDY20008 | Canola | nucleus | 45.02 | 37.01 |
| CDY03431 | Canola | nucleus | 35.5 | 36.77 |
| CDX88950 | Canola | nucleus | 33.33 | 36.67 |
| CDY24844 | Canola | nucleus | 33.33 | 36.67 |
| CDX86404 | Canola | mitochondrion | 14.29 | 36.26 |
| CDX69541 | Canola | nucleus | 41.13 | 36.12 |
| CDX85228 | Canola | mitochondrion, nucleus | 13.85 | 35.16 |
| CDY00104 | Canola | nucleus | 46.75 | 34.62 |
| CDY00105 | Canola | mitochondrion | 13.85 | 32.65 |
| CDY20009 | Canola | mitochondrion | 13.85 | 32.65 |
| CDY54719 | Canola | nucleus | 33.77 | 32.37 |
| CDX85059 | Canola | nucleus | 32.9 | 31.93 |
| CDX74428 | Canola | nucleus | 43.72 | 31.86 |
| CDX73775 | Canola | nucleus | 29.44 | 31.63 |
| CDX85230 | Canola | nucleus | 46.32 | 31.56 |
| CDY56033 | Canola | nucleus | 37.66 | 31.41 |
| CDX77960 | Canola | nucleus | 29.44 | 31.05 |
| CDX81284 | Canola | nucleus | 34.2 | 30.98 |
| CDX86403 | Canola | nucleus | 45.89 | 30.81 |
| CDY33960 | Canola | nucleus | 34.63 | 29.74 |
| CDY37827 | Canola | nucleus | 34.63 | 29.41 |
| CDY37252 | Canola | nucleus | 32.9 | 29.12 |
| CDY62531 | Canola | nucleus | 32.9 | 28.9 |
| CDX90679 | Canola | nucleus | 29.44 | 27.98 |
| CDY14559 | Canola | nucleus | 34.63 | 27.3 |
| CDY28987 | Canola | nucleus | 28.14 | 26.53 |
| CDX85886 | Canola | nucleus | 33.77 | 26.53 |
| CDY09363 | Canola | nucleus | 33.77 | 26.17 |
| CDY41692 | Canola | nucleus | 33.77 | 26.0 |
| CDX68137 | Canola | nucleus | 32.9 | 25.59 |
| CDY45419 | Canola | nucleus | 31.6 | 25.35 |
| CDY70550 | Canola | nucleus | 28.14 | 25.29 |
| CDY53549 | Canola | nucleus | 34.2 | 25.16 |
| CDY45257 | Canola | nucleus | 33.77 | 25.08 |
| CDX81638 | Canola | nucleus | 34.2 | 25.08 |
| CDY39311 | Canola | nucleus | 32.9 | 24.84 |
| CDX73152 | Canola | nucleus | 32.03 | 24.75 |
| CDY70108 | Canola | nucleus | 28.14 | 24.53 |
| CDY71124 | Canola | nucleus | 26.84 | 24.12 |
| CDY46298 | Canola | cytosol | 7.36 | 20.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078E5N4 | EnsemblPlants:CDX95914 | ProteinID:CDX95914 | ProteinID:CDX95914.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00101922001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF29 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDAE34 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g28170D
Coordinates
chrLK031892:-:38698..39393
Molecular Weight (calculated)
25062.4 Da
IEP (calculated)
8.073
GRAVY (calculated)
-0.706
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVCYKECLK NHAANLGGHA LDGCGEFMPT PTATPTDPSS LRCAACGCHR NFHRRDPSDH LNFLPSHPTS SPSGTESPPS QSLHHVASPV PCSYYTSAPH
101: HMLLSLSSGF PGPADQDPAA VRSENSSKGG MRKRTRTKFT AEQKIKMRAF AEKAGWKING CDEKLVREFC SENGIERGVL KVWMHNNKYS LLNGKNREIL
201: SMEDQPRLCL NTQSCNNGGE DGDNVGGSSS S
101: HMLLSLSSGF PGPADQDPAA VRSENSSKGG MRKRTRTKFT AEQKIKMRAF AEKAGWKING CDEKLVREFC SENGIERGVL KVWMHNNKYS LLNGKNREIL
201: SMEDQPRLCL NTQSCNNGGE DGDNVGGSSS S
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.