Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013822.1-P | Field mustard | nucleus | 98.67 | 98.67 |
| CDY03431 | Canola | nucleus | 94.22 | 95.07 |
| CDY08945 | Canola | nucleus | 83.56 | 89.52 |
| CDX88950 | Canola | nucleus | 83.56 | 89.52 |
| CDY24844 | Canola | nucleus | 82.22 | 88.1 |
| AT4G24660.2 | Thale cress | nucleus | 86.67 | 84.42 |
| CDY21695 | Canola | mitochondrion | 20.89 | 53.41 |
| CDX81897 | Canola | mitochondrion | 20.44 | 52.27 |
| CDX83807 | Canola | mitochondrion | 20.0 | 51.14 |
| CDY26722 | Canola | mitochondrion | 19.56 | 50.0 |
| CDY19248 | Canola | mitochondrion | 19.56 | 50.0 |
| CDX96695 | Canola | mitochondrion | 19.11 | 48.86 |
| CDX86404 | Canola | mitochondrion | 19.56 | 48.35 |
| CDX85228 | Canola | mitochondrion, nucleus | 19.11 | 47.25 |
| CDX73105 | Canola | mitochondrion | 19.11 | 45.74 |
| CDX96558 | Canola | mitochondrion | 18.67 | 44.68 |
| CDX85849 | Canola | mitochondrion | 19.11 | 44.33 |
| CDX68172 | Canola | mitochondrion | 19.11 | 44.33 |
| CDY00105 | Canola | mitochondrion | 18.67 | 42.86 |
| CDY20009 | Canola | mitochondrion | 18.67 | 42.86 |
| CDX81284 | Canola | nucleus | 47.56 | 41.96 |
| CDY54719 | Canola | nucleus | 44.89 | 41.91 |
| CDX77960 | Canola | nucleus | 37.33 | 38.36 |
| CDY33960 | Canola | nucleus | 45.78 | 38.29 |
| CDX73775 | Canola | nucleus | 36.44 | 38.14 |
| CDY37827 | Canola | nucleus | 45.78 | 37.87 |
| CDX88760 | Canola | nucleus | 29.78 | 37.02 |
| CDY69628 | Canola | nucleus | 29.33 | 36.87 |
| CDY14559 | Canola | nucleus | 48.0 | 36.86 |
| CDX95914 | Canola | nucleus | 37.33 | 36.36 |
| CDY37252 | Canola | nucleus | 41.78 | 36.02 |
| CDY62531 | Canola | nucleus | 41.78 | 35.74 |
| CDX90679 | Canola | nucleus | 37.33 | 34.57 |
| CDY01760 | Canola | nucleus | 37.78 | 33.2 |
| CDY28987 | Canola | nucleus | 36.0 | 33.06 |
| CDX85886 | Canola | nucleus | 43.11 | 32.99 |
| CDY45419 | Canola | nucleus | 42.22 | 32.99 |
| CDY28566 | Canola | nucleus | 36.89 | 32.55 |
| CDY44079 | Canola | nucleus | 36.89 | 32.55 |
| CDX68137 | Canola | nucleus | 42.67 | 32.32 |
| CDY70550 | Canola | nucleus | 36.89 | 32.3 |
| CDX73152 | Canola | nucleus | 42.22 | 31.77 |
| CDY09363 | Canola | nucleus | 41.78 | 31.54 |
| CDY70108 | Canola | nucleus | 36.89 | 31.32 |
| CDY41692 | Canola | nucleus | 41.33 | 31.0 |
| CDY53549 | Canola | nucleus | 42.67 | 30.57 |
| CDX81638 | Canola | nucleus | 42.67 | 30.48 |
| CDY45257 | Canola | nucleus | 41.78 | 30.23 |
| CDY71124 | Canola | nucleus | 34.22 | 29.96 |
| CDX69541 | Canola | nucleus | 34.67 | 29.66 |
| CDY20008 | Canola | nucleus | 36.89 | 29.54 |
| CDY39311 | Canola | nucleus | 39.56 | 29.09 |
| CDY00104 | Canola | nucleus | 37.78 | 27.24 |
| CDY46298 | Canola | cytosol | 9.78 | 26.19 |
| CDX85059 | Canola | nucleus | 27.11 | 25.63 |
| CDX85230 | Canola | nucleus | 38.22 | 25.37 |
| CDX74428 | Canola | nucleus | 35.56 | 25.24 |
| CDY56033 | Canola | nucleus | 30.22 | 24.55 |
| CDX86403 | Canola | nucleus | 37.33 | 24.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078H9X0 | UniProt:A0A078H9X0 | EnsemblPlants:CDY34299 | ProteinID:CDY34299 |
| ProteinID:CDY34299.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00056334001 |
| InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDC544 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
BnaA01g14020DBnaA01g14020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9X0]
Coordinates
chrLK032332:-:202232..203087
Molecular Weight (calculated)
24306.4 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.849
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEEQEEEM EMSGANPTGG YDSLSGEGAT SSGGGGGGGS RKTVGGSKVR YRECLKNHAV NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GCHRNFHRKE
101: TEVMSGRAHR VPTYYNRPPQ LPPPGYLHLT SPAAAGQPYK PPAASGDEED TSNPSSSGGT RAKRFRTKFT AEQKDKMLAF AERLGWRIQK HDDAAVEQFC
201: AETGVRRQVL KIWMHNNKNS LGKKP
101: TEVMSGRAHR VPTYYNRPPQ LPPPGYLHLT SPAAAGQPYK PPAASGDEED TSNPSSSGGT RAKRFRTKFT AEQKDKMLAF AERLGWRIQK HDDAAVEQFC
201: AETGVRRQVL KIWMHNNKNS LGKKP
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.