Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86404 | Canola | mitochondrion | 98.9 | 98.9 |
| Bra025362.1-P | Field mustard | mitochondrion | 98.9 | 90.0 |
| AT3G28917.1 | Thale cress | mitochondrion | 95.6 | 87.0 |
| CDY20009 | Canola | mitochondrion | 93.41 | 86.73 |
| CDY00105 | Canola | mitochondrion | 91.21 | 84.69 |
| KRH18477 | Soybean | cytosol, mitochondrion | 65.93 | 73.17 |
| KRG93529 | Soybean | cytosol, mitochondrion | 71.43 | 67.01 |
| CDX81897 | Canola | mitochondrion | 61.54 | 63.64 |
| CDX83807 | Canola | mitochondrion | 61.54 | 63.64 |
| CDY26722 | Canola | mitochondrion | 60.44 | 62.5 |
| CDY21695 | Canola | mitochondrion | 60.44 | 62.5 |
| CDY19248 | Canola | mitochondrion | 60.44 | 62.5 |
| CDX96695 | Canola | mitochondrion | 59.34 | 61.36 |
| CDX73105 | Canola | mitochondrion | 59.34 | 57.45 |
| CDX96558 | Canola | mitochondrion | 58.24 | 56.38 |
| VIT_14s0108g00810.t01 | Wine grape | cytosol | 78.02 | 55.04 |
| CDX85849 | Canola | mitochondrion | 58.24 | 54.64 |
| CDX68172 | Canola | mitochondrion | 58.24 | 54.64 |
| CDY46298 | Canola | cytosol | 24.18 | 26.19 |
| CDY03431 | Canola | nucleus | 47.25 | 19.28 |
| CDY34299 | Canola | nucleus | 47.25 | 19.11 |
| CDY24844 | Canola | nucleus | 43.96 | 19.05 |
| CDX88950 | Canola | nucleus | 43.96 | 19.05 |
| CDY08945 | Canola | nucleus | 43.96 | 19.05 |
| CDX77960 | Canola | nucleus | 41.76 | 17.35 |
| CDY70108 | Canola | nucleus | 49.45 | 16.98 |
| CDX90679 | Canola | nucleus | 45.05 | 16.87 |
| CDY28987 | Canola | nucleus | 45.05 | 16.73 |
| CDY70550 | Canola | nucleus | 47.25 | 16.73 |
| CDY71124 | Canola | nucleus | 46.15 | 16.34 |
| CDX73775 | Canola | nucleus | 38.46 | 16.28 |
| CDY54719 | Canola | nucleus | 42.86 | 16.18 |
| CDX81284 | Canola | nucleus | 43.96 | 15.69 |
| CDY69628 | Canola | nucleus | 30.77 | 15.64 |
| CDX88760 | Canola | nucleus | 30.77 | 15.47 |
| CDY09363 | Canola | nucleus | 49.45 | 15.1 |
| CDY41692 | Canola | nucleus | 49.45 | 15.0 |
| CDY37252 | Canola | nucleus | 41.76 | 14.56 |
| CDY62531 | Canola | nucleus | 41.76 | 14.45 |
| CDX95914 | Canola | nucleus | 35.16 | 13.85 |
| CDY53549 | Canola | nucleus | 47.25 | 13.69 |
| CDX81638 | Canola | nucleus | 47.25 | 13.65 |
| CDY37827 | Canola | nucleus | 40.66 | 13.6 |
| CDY45257 | Canola | nucleus | 46.15 | 13.5 |
| CDY33960 | Canola | nucleus | 39.56 | 13.38 |
| CDY44079 | Canola | nucleus | 37.36 | 13.33 |
| CDY14559 | Canola | nucleus | 42.86 | 13.31 |
| CDY39311 | Canola | nucleus | 43.96 | 13.07 |
| CDX73152 | Canola | nucleus | 42.86 | 13.04 |
| CDY28566 | Canola | nucleus | 36.26 | 12.94 |
| CDX69541 | Canola | nucleus | 37.36 | 12.93 |
| CDX85886 | Canola | nucleus | 41.76 | 12.93 |
| CDY01760 | Canola | nucleus | 36.26 | 12.89 |
| CDY45419 | Canola | nucleus | 40.66 | 12.85 |
| CDX68137 | Canola | nucleus | 41.76 | 12.79 |
| CDY20008 | Canola | nucleus | 38.46 | 12.46 |
| CDY56033 | Canola | nucleus | 37.36 | 12.27 |
| CDY00104 | Canola | nucleus | 38.46 | 11.22 |
| CDX74428 | Canola | nucleus | 37.36 | 10.73 |
| CDX85230 | Canola | nucleus | 37.36 | 10.03 |
| CDX86403 | Canola | nucleus | 37.36 | 9.88 |
| CDX85059 | Canola | nucleus | 20.88 | 7.98 |
Protein Annotations
| EnsemblPlants:CDX85228 | EnsemblPlantsGene:GSBRNA2T00142864001 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF7 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | ProteinID:CDX85228 | ProteinID:CDX85228.1 | SEG:seg |
| TIGRFAMs:TIGR01566 | UniParc:UPI0004EE5A24 | MapMan:15.5.3.13 | : | : | : |
Description
BnaC07g25390D
Coordinates
chrLK031841:+:462593..463378
Molecular Weight (calculated)
9804.5 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.589
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MRKRQVVLRR ASPEEPSRSS GLRYGECQKN HAAAVGGYAV DGCREFMASN GEEGSVAALT CAACGCHRSF HRREIETEVV CDCNSPPSTG N
1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN
Arabidopsis Description
MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.