CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039039.1-P	Field mustard	mitochondrion	96.94	96.94
CDY20009	Canola	mitochondrion	96.94	96.94
CDX86404	Canola	mitochondrion	85.71	92.31
CDX85228	Canola	mitochondrion, nucleus	84.69	91.21
AT3G28917.1	Thale cress	mitochondrion	90.82	89.0
KRH18477	Soybean	cytosol, mitochondrion	62.24	74.39
CDX81897	Canola	mitochondrion	61.22	68.18
KRG93529	Soybean	cytosol, mitochondrion	67.35	68.04
CDY21695	Canola	mitochondrion	60.2	67.05
CDX83807	Canola	mitochondrion	60.2	67.05
CDY26722	Canola	mitochondrion	59.18	65.91
CDY19248	Canola	mitochondrion	59.18	65.91
CDX96695	Canola	mitochondrion	59.18	65.91
CDX73105	Canola	mitochondrion	57.14	59.57
CDX96558	Canola	mitochondrion	56.12	58.51
VIT_14s0108g00810.t01	Wine grape	cytosol	76.53	58.14
CDX85849	Canola	mitochondrion	57.14	57.73
CDX68172	Canola	mitochondrion	57.14	57.73
CDY46298	Canola	cytosol	22.45	26.19
CDY34299	Canola	nucleus	42.86	18.67
CDY03431	Canola	nucleus	41.84	18.39
CDY24844	Canola	nucleus	38.78	18.1
CDX88950	Canola	nucleus	38.78	18.1
CDY08945	Canola	nucleus	38.78	18.1
CDX77960	Canola	nucleus	38.78	17.35
CDY70550	Canola	nucleus	44.9	17.12
CDY70108	Canola	nucleus	45.92	16.98
CDX90679	Canola	nucleus	41.84	16.87
CDY28987	Canola	nucleus	41.84	16.73
CDY71124	Canola	nucleus	42.86	16.34
CDX73775	Canola	nucleus	35.71	16.28
CDY54719	Canola	nucleus	39.8	16.18
CDX81284	Canola	nucleus	40.82	15.69
CDY69628	Canola	nucleus	28.57	15.64
CDX88760	Canola	nucleus	28.57	15.47
CDY37252	Canola	nucleus	40.82	15.33
CDY62531	Canola	nucleus	40.82	15.21
CDX95914	Canola	nucleus	32.65	13.85
CDY09363	Canola	nucleus	41.84	13.76
CDX73152	Canola	nucleus	41.84	13.71
CDX69541	Canola	nucleus	36.73	13.69
CDY41692	Canola	nucleus	41.84	13.67
CDX85886	Canola	nucleus	40.82	13.61
CDY37827	Canola	nucleus	37.76	13.6
CDY45419	Canola	nucleus	39.8	13.54
CDY20008	Canola	nucleus	38.78	13.52
CDX68137	Canola	nucleus	40.82	13.47
CDY33960	Canola	nucleus	36.73	13.38
CDY14559	Canola	nucleus	39.8	13.31
CDY53549	Canola	nucleus	41.84	13.06
CDX81638	Canola	nucleus	41.84	13.02
CDY44079	Canola	nucleus	33.67	12.94
CDY01760	Canola	nucleus	33.67	12.89
CDY45257	Canola	nucleus	40.82	12.86
CDY56033	Canola	nucleus	35.71	12.64
CDY28566	Canola	nucleus	32.65	12.55
CDY39311	Canola	nucleus	38.78	12.42
CDY00104	Canola	nucleus	37.76	11.86
CDX74428	Canola	nucleus	35.71	11.04
CDX85230	Canola	nucleus	37.76	10.91
CDX86403	Canola	nucleus	37.76	10.76
CDX85059	Canola	nucleus	21.43	8.82

Protein Annotations

EnsemblPlants:CDY00105	EnsemblPlantsGene:GSBRNA2T00109606001	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948	PANTHER:PTHR31948:SF7
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	ProteinID:CDY00105	ProteinID:CDY00105.1	TIGRFAMs:TIGR01566
UniParc:UPI0004EAEE27	MapMan:15.5.3.13	:	:	:	:

Description

BnaC09g01960D

Coordinates

chrLK031916:-:825592..825888

Molecular Weight (calculated)

10595.4 Da

IEP (calculated)

8.293

GRAVY (calculated)

-0.572

Length

98 amino acids

Sequence
(BLAST)

1: MRKRQVVLRR ASPEEPSRIS STASSRMLRG VRYGECQKNH AAAVGGYAVD GCREFMASNG EEGTVSALTC AACGCHRSFH RRETEVVCDC ESPPSSGN

Best Arabidopsis Sequence Match ( AT3G28917.1 )
(BLAST)

1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN

Arabidopsis Description

MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.