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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX81662
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY28987
CDY32971
CDY33749
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65410.1 CDX81638 AT1G14440.1 16428600
AT5G65410.1 CDY39311 AT1G14440.1 16428600
AT5G65410.1 CDY45257 AT1G14440.1 16428600
AT5G65410.1 CDY53549 AT1G14440.1 16428600
AT5G65410.1 CDX81662 AT1G14687.1 16428600
AT5G65410.1 CDY33749 AT1G14687.1 16428600
AT5G65410.1 CDX95914 AT1G69600.1 16428600
AT5G65410.1 CDY01760 AT1G69600.1 16428600
AT5G65410.1 CDY28566 AT1G69600.1 16428600
AT5G65410.1 CDY44079 AT1G69600.1 16428600
AT5G65410.1 CDX73152 AT1G75240.1 16428600
AT5G65410.1 CDY37252 AT1G75240.1 16428600
AT5G65410.1 CDY45419 AT1G75240.1 16428600
AT5G65410.1 CDY62531 AT1G75240.1 16428600
AT5G65410.1 CDY70108 AT2G18350.1 16428600
AT5G65410.1 CDY70550 AT2G18350.1 16428600
AT5G65410.1 CDY71124 AT2G18350.1 16428600
AT5G65410.1 CDX85230 AT3G28920.1 16428600
AT5G65410.1 CDX86403 AT3G28920.1 16428600
AT5G65410.1 CDY00104 AT3G28920.1 16428600
AT5G65410.1 CDY20008 AT3G28920.1 16428600
AT5G65410.1 CDX73775 AT3G50890.1 16428600
AT5G65410.1 CDX77960 AT3G50890.1 16428600
AT5G65410.1 CDX90679 AT3G50890.1 16428600
AT5G65410.1 CDY28987 AT3G50890.1 16428600
AT5G65410.1 CDX69541 AT5G15210.1 16428600
AT5G65410.1 CDX85059 AT5G15210.1 16428600
AT5G65410.1 CDX74428 AT5G39760.1 16428600
AT5G65410.1 CDY56033 AT5G39760.1 16428600
AT5G65410.1 CDX74428 AT5G39760.1 21798944
AT5G65410.1 CDY56033 AT5G39760.1 21798944
AT5G65410.1 CDY32971 AT5G42950.1 16120600
AT5G65410.1 CDX81284 AT5G65410.1 16428600
AT5G65410.1 CDY14559 AT5G65410.1 16428600
AT5G65410.1 CDY33960 AT5G65410.1 16428600
AT5G65410.1 CDY37827 AT5G65410.1 16428600
AT5G65410.1 CDY54719 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031859.1-P Field mustard nucleus 95.54 94.49
CDY37827 Canola nucleus 95.54 94.49
CDY54719 Canola nucleus 76.58 85.48
CDY14559 Canola nucleus 89.96 82.59
CDX81284 Canola nucleus 77.7 81.96
AT5G65410.1 Thale cress nucleus 84.76 81.72
GSMUA_Achr7P19060_001 Banana nucleus 37.17 48.54
GSMUA_Achr6P02170_001 Banana nucleus 40.89 47.62
CDY08945 Canola nucleus 36.8 47.14
Solyc05g051420.1.1 Tomato nucleus 29.0 46.71
CDX88950 Canola nucleus 36.43 46.67
CDY21695 Canola mitochondrion 15.24 46.59
GSMUA_Achr3P20390_001 Banana nucleus 35.69 46.38
PGSC0003DMT400084919 Potato nucleus 30.11 46.29
CDY03431 Canola nucleus 38.29 46.19
CDY34299 Canola nucleus 38.29 45.78
CDY24844 Canola nucleus 35.69 45.71
VIT_00s0199g00250.t01 Wine grape nucleus 41.26 45.49
CDX81897 Canola mitochondrion 14.87 45.45
GSMUA_Achr10P... Banana nucleus 38.29 44.98
GSMUA_Achr5P05500_001 Banana nucleus 39.78 44.96
CDY26722 Canola mitochondrion 14.5 44.32
CDY19248 Canola mitochondrion 14.5 44.32
CDX83807 Canola mitochondrion 14.5 44.32
CDX73105 Canola mitochondrion 15.24 43.62
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 23.79 43.54
CDX96558 Canola mitochondrion 14.87 42.55
KRH74513 Soybean nucleus 40.15 42.52
CDX68172 Canola mitochondrion 15.24 42.27
CDX85849 Canola mitochondrion 15.24 42.27
CDX96695 Canola mitochondrion 13.75 42.05
CDX88760 Canola nucleus 27.51 40.88
CDY69628 Canola nucleus 26.77 40.22
GSMUA_AchrUn_... Banana nucleus 36.8 39.6
CDX85228 Canola mitochondrion, nucleus 13.38 39.56
CDX86404 Canola mitochondrion 13.38 39.56
Zm00001d020774_P001 Maize nucleus 40.15 39.56
Os09t0466400-01 Rice nucleus 40.15 38.71
PGSC0003DMT400060623 Potato nucleus 34.94 38.68
Os08t0479400-01 Rice nucleus 41.64 38.62
CDX73775 Canola nucleus 30.48 38.14
Zm00001d005931_P001 Maize nucleus 40.52 38.11
Solyc04g014260.1.1 Tomato nucleus 34.57 37.65
CDX77960 Canola nucleus 30.11 36.99
KRH69650 Soybean nucleus 40.52 36.95
EER96888 Sorghum nucleus 41.26 36.76
CDY20009 Canola mitochondrion 13.38 36.73
CDY00105 Canola mitochondrion 13.38 36.73
Zm00001d031840_P001 Maize nucleus 41.64 36.36
EES15144 Sorghum nucleus 41.64 36.01
CDY37252 Canola nucleus 34.57 35.63
CDY62531 Canola nucleus 34.57 35.36
TraesCS5D01G253100.1 Wheat nucleus 38.29 34.8
TraesCS5B01G243800.1 Wheat nucleus 38.29 34.68
CDX95914 Canola nucleus 29.74 34.63
HORVU5Hr1G069730.1 Barley nucleus 38.66 34.44
TraesCS5A01G246500.1 Wheat nucleus 37.55 34.01
CDX90679 Canola nucleus 30.11 33.33
CDY01760 Canola nucleus 31.23 32.81
CDX85886 Canola nucleus 34.94 31.97
CDY45419 Canola nucleus 34.2 31.94
CDX69541 Canola nucleus 31.23 31.94
CDY28987 Canola nucleus 29.0 31.84
CDY28566 Canola nucleus 30.11 31.76
CDY44079 Canola nucleus 29.74 31.37
CDX73152 Canola nucleus 34.57 31.1
CDY20008 Canola nucleus 32.34 30.96
CDY09363 Canola nucleus 34.2 30.87
CDY70550 Canola nucleus 29.37 30.74
CDX68137 Canola nucleus 33.83 30.64
CDY41692 Canola nucleus 33.83 30.33
CDY00104 Canola nucleus 34.94 30.13
CDY70108 Canola nucleus 29.37 29.81
CDY45257 Canola nucleus 34.2 29.58
CDY53549 Canola nucleus 34.2 29.3
CDX81638 Canola nucleus 34.2 29.21
CDX85059 Canola nucleus 25.65 28.99
CDY39311 Canola nucleus 32.71 28.76
CDY56033 Canola nucleus 28.62 27.8
CDX74428 Canola nucleus 32.34 27.44
CDX85230 Canola nucleus 34.57 27.43
CDX86403 Canola nucleus 33.83 26.45
CDY46298 Canola cytosol 8.18 26.19
CDY71124 Canola nucleus 24.91 26.07
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078H5X6UniProt:A0A078H5X6EnsemblPlants:CDY33960ProteinID:CDY33960
ProteinID:CDY33960.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00055796001
InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456PFAM:PD125774PFAM:PF04770PFscan:PS51523
PANTHER:PTHR31948PANTHER:PTHR31948:SF5SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0004EE6E4D
InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::::
Description
BnaC02g43770DBnaC02g43770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5X6]
Coordinates
chrLK032325:-:145142..145951
Molecular Weight (calculated)
30089.3 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.846
Length
269 amino acids
Sequence
(BLAST)
001: MDFEEEINLH EEEEEEDALY DSPPLPPPSR VLKASTESPD TAGTTSTGEG GYMVAHGGSS FGGGGRFRFR ECLKNQAVNI GGHAVDGCGE YMPAGIEGTI
101: EALKCAACGC HRNFHRKESL YFHHLAPPPP PPPGFYRLPA PVRYRPPPSQ APPLQLALPQ RERSEDRMET SSAEAGGIRK RFRTKFTAEQ KERMLGLAER
201: IGWRIQRQDD EVIQRFCQET GVPRQVLKVW LHNNKHTLGK SLSPPLHHHQ NPTLPPHESS SFHHEQDQP
Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.