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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G14440.1 CDX81638 AT1G14440.1 16428600
AT1G14440.1 CDY39311 AT1G14440.1 16428600
AT1G14440.1 CDY45257 AT1G14440.1 16428600
AT1G14440.1 CDY53549 AT1G14440.1 16428600
AT1G14440.1 CDX95914 AT1G69600.1 16428600
AT1G14440.1 CDY01760 AT1G69600.1 16428600
AT1G14440.1 CDY28566 AT1G69600.1 16428600
AT1G14440.1 CDY44079 AT1G69600.1 16428600
AT1G14440.1 CDX73152 AT1G75240.1 16428600
AT1G14440.1 CDY37252 AT1G75240.1 16428600
AT1G14440.1 CDY45419 AT1G75240.1 16428600
AT1G14440.1 CDY62531 AT1G75240.1 16428600
AT1G14440.1 CDY70108 AT2G18350.1 16428600
AT1G14440.1 CDY70550 AT2G18350.1 16428600
AT1G14440.1 CDY71124 AT2G18350.1 16428600
AT1G14440.1 CDX85230 AT3G28920.1 16428600
AT1G14440.1 CDX86403 AT3G28920.1 16428600
AT1G14440.1 CDY00104 AT3G28920.1 16428600
AT1G14440.1 CDY20008 AT3G28920.1 16428600
AT1G14440.1 CDX73775 AT3G50890.1 16428600
AT1G14440.1 CDX77960 AT3G50890.1 16428600
AT1G14440.1 CDX90679 AT3G50890.1 16428600
AT1G14440.1 CDY28987 AT3G50890.1 16428600
AT1G14440.1 CDX69541 AT5G15210.1 16428600
AT1G14440.1 CDX85059 AT5G15210.1 16428600
AT1G14440.1 CDX74428 AT5G39760.1 16428600
AT1G14440.1 CDY56033 AT5G39760.1 16428600
AT1G14440.1 CDX81284 AT5G65410.1 16428600
AT1G14440.1 CDY14559 AT5G65410.1 16428600
AT1G14440.1 CDY33960 AT5G65410.1 16428600
AT1G14440.1 CDY37827 AT5G65410.1 16428600
AT1G14440.1 CDY54719 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026830.1-P Field mustard nucleus 100.0 100.0
CDX81638 Canola nucleus 98.09 97.78
AT1G14440.1 Thale cress nucleus 88.53 89.1
CDY45257 Canola nucleus 86.94 87.78
CDY39311 Canola nucleus 82.48 84.64
CDY09363 Canola nucleus 53.82 56.71
CDY41692 Canola nucleus 53.5 56.0
GSMUA_Achr6P28870_001 Banana nucleus 38.85 53.98
GSMUA_Achr1P13300_001 Banana nucleus 38.53 53.54
VIT_12s0035g01880.t01 Wine grape nucleus 44.9 50.18
CDY21695 Canola mitochondrion 14.01 50.0
GSMUA_Achr9P08090_001 Banana nucleus 38.22 49.79
GSMUA_Achr6P17420_001 Banana nucleus 32.8 49.76
GSMUA_Achr3P16680_001 Banana nucleus 36.62 49.36
CDX83807 Canola mitochondrion 13.69 48.86
CDX81897 Canola mitochondrion 13.69 48.86
GSMUA_Achr10P... Banana nucleus 37.58 48.76
CDX85228 Canola mitochondrion, nucleus 13.69 47.25
CDX86404 Canola mitochondrion 13.69 47.25
KRH51275 Soybean nucleus 42.04 46.64
CDX96695 Canola mitochondrion 13.06 46.59
CDY19248 Canola mitochondrion 13.06 46.59
CDY26722 Canola mitochondrion 13.06 46.59
KRH01880 Soybean nucleus 41.72 45.8
PGSC0003DMT400053397 Potato nucleus 40.13 43.9
Solyc01g102980.2.1 Tomato nucleus 40.45 43.79
CDX96558 Canola mitochondrion 13.06 43.62
CDX73105 Canola mitochondrion 13.06 43.62
CDY08945 Canola nucleus 28.98 43.33
CDX88950 Canola nucleus 28.98 43.33
CDY34299 Canola nucleus 30.57 42.67
CDY03431 Canola nucleus 30.25 42.6
CDY24844 Canola nucleus 28.34 42.38
CDY00105 Canola mitochondrion 13.06 41.84
CDY20009 Canola mitochondrion 13.06 41.84
CDX68172 Canola mitochondrion 12.42 40.21
CDX85849 Canola mitochondrion 12.42 40.21
CDY37252 Canola nucleus 30.89 37.16
CDY54719 Canola nucleus 28.34 36.93
CDY62531 Canola nucleus 30.89 36.88
CDX81284 Canola nucleus 29.62 36.47
CDX88760 Canola nucleus 21.02 36.46
CDY69628 Canola nucleus 20.38 35.75
CDX77960 Canola nucleus 23.89 34.25
CDY70550 Canola nucleus 28.03 34.24
CDY33960 Canola nucleus 29.3 34.2
CDX95914 Canola nucleus 25.16 34.2
CDY37827 Canola nucleus 29.62 34.19
CDY70108 Canola nucleus 28.34 33.58
CDX73775 Canola nucleus 22.93 33.49
CDY45419 Canola nucleus 30.57 33.33
CDY28566 Canola nucleus 26.75 32.94
CDY14559 Canola nucleus 30.57 32.76
CDX85886 Canola nucleus 30.57 32.65
CDY44079 Canola nucleus 26.43 32.55
CDX68137 Canola nucleus 30.57 32.32
CDX90679 Canola nucleus 24.84 32.1
CDY01760 Canola nucleus 26.11 32.03
KXG23238 Sorghum nucleus 33.44 32.01
CDX69541 Canola nucleus 26.43 31.56
CDX73152 Canola nucleus 29.94 31.44
CDY71124 Canola nucleus 25.48 31.13
CDY28987 Canola nucleus 23.89 30.61
Zm00001d041780_P001 Maize nucleus 33.76 30.37
CDY20008 Canola nucleus 27.07 30.25
TraesCS4D01G086300.1 Wheat nucleus 36.94 29.82
KXG28111 Sorghum nucleus 36.94 29.44
TraesCS4B01G089700.1 Wheat nucleus 36.94 29.22
TraesCS4A01G226800.1 Wheat nucleus 36.94 28.93
Os12t0208900-00 Rice nucleus 20.38 28.83
Os11t0243300-01 Rice cytosol, mitochondrion, nucleus, plastid 37.58 28.3
CDY00104 Canola nucleus 27.71 27.88
CDY46298 Canola cytosol 7.32 27.38
HORVU4Hr1G015250.6 Barley nucleus, plastid 36.62 27.38
Zm00001d049000_P001 Maize plastid 36.62 27.38
CDX85059 Canola nucleus 20.7 27.31
CDX74428 Canola nucleus 27.07 26.81
CDY56033 Canola nucleus 22.61 25.63
CDX85230 Canola nucleus 26.75 24.78
CDX86403 Canola nucleus 26.75 24.42
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078IVY4UniProt:A0A078IVY4EnsemblPlants:CDY53549ProteinID:CDY53549
ProteinID:CDY53549.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00010909001
InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456PFAM:PD125774PFAM:PF04770PFscan:PS51523
PANTHER:PTHR31948PANTHER:PTHR31948:SF19SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002542DA0
InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::::
Description
BnaA09g57080DBnaA09g57080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVY4]
Coordinates
chrLK033212:+:51836..53891
Molecular Weight (calculated)
35390.6 Da
IEP (calculated)
7.473
GRAVY (calculated)
-0.903
Length
314 amino acids
Sequence
(BLAST)
001: MEIASQEDHD MPIPLNTAFV GGGGGHGHMI HHHNDHHAAN SAPPTHNNNN ITTQPPQMPL HGNGHGNNHD HRQHQDPHHV SYNAIIKKPI ITYKECLKNH
101: AAAMGGNATD GCGEFMPSGE DGSIEALTCS ACNCHRNFHR KEVEGETAAT AISSFHQPPP PRKLMLNHHN IRSAMPHKMI MPVGVSNYRY MHHSESDDFM
201: EEDGVTTASR PPPYNQKKRF RTKFTPEQKE KMLSFAEKVG WKLQRQEDSV VQRFCEEIGV KRRVLKVWMH NNKLHFSKKD SSNSINLEDN DNEKINNVNN
301: VDLSGNIDMT KIVP
Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.