Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102980.2.1 | Tomato | nucleus | 95.12 | 94.14 |
| VIT_12s0035g01880.t01 | Wine grape | nucleus | 67.25 | 68.68 |
| KRH51275 | Soybean | nucleus | 60.98 | 61.84 |
| KRH01880 | Soybean | nucleus | 57.84 | 58.04 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 44.6 | 56.64 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 43.9 | 55.75 |
| GSMUA_Achr10P... | Banana | nucleus | 45.64 | 54.13 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 39.02 | 54.11 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 44.95 | 53.53 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 42.51 | 52.36 |
| PGSC0003DMT400084919 | Potato | nucleus | 31.01 | 50.86 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 24.74 | 48.3 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 12.54 | 43.37 |
| PGSC0003DMT400033624 | Potato | nucleus | 35.89 | 42.92 |
| AT1G14440.1 | Thale cress | nucleus | 44.95 | 41.35 |
| Bra026589.1-P | Field mustard | nucleus | 42.86 | 41.0 |
| Bra026219.1-P | Field mustard | nucleus | 44.25 | 40.97 |
| CDY09363 | Canola | nucleus | 42.51 | 40.94 |
| CDY41692 | Canola | nucleus | 42.51 | 40.67 |
| AT2G02540.2 | Thale cress | nucleus | 43.9 | 40.65 |
| CDY45257 | Canola | nucleus | 43.9 | 40.51 |
| CDX81638 | Canola | nucleus | 44.25 | 40.32 |
| CDY53549 | Canola | nucleus | 43.9 | 40.13 |
| Bra026830.1-P | Field mustard | nucleus | 43.9 | 40.13 |
| CDY39311 | Canola | nucleus | 41.46 | 38.89 |
| PGSC0003DMT400060623 | Potato | nucleus | 32.75 | 38.68 |
| PGSC0003DMT400083993 | Potato | nucleus | 23.69 | 37.99 |
| PGSC0003DMT400009581 | Potato | nucleus | 34.84 | 35.21 |
| KXG23238 | Sorghum | nucleus | 37.63 | 32.93 |
| PGSC0003DMT400086860 | Potato | cytosol | 12.89 | 31.09 |
| Zm00001d041780_P001 | Maize | nucleus | 37.28 | 30.66 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 41.46 | 30.59 |
| PGSC0003DMT400090846 | Potato | cytosol | 12.89 | 30.58 |
| PGSC0003DMT400080288 | Potato | nucleus | 30.31 | 30.31 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 41.81 | 30.23 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 41.81 | 29.93 |
| PGSC0003DMT400009033 | Potato | nucleus | 31.36 | 29.8 |
| Os12t0208900-00 | Rice | nucleus | 23.0 | 29.73 |
| KXG28111 | Sorghum | nucleus | 40.07 | 29.19 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 40.77 | 28.06 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 40.77 | 27.86 |
| Zm00001d049000_P001 | Maize | plastid | 40.77 | 27.86 |
| PGSC0003DMT400035635 | Potato | nucleus | 29.62 | 27.69 |
| PGSC0003DMT400017840 | Potato | nucleus | 31.01 | 27.05 |
| PGSC0003DMT400034368 | Potato | nucleus | 31.01 | 25.72 |
| PGSC0003DMT400044269 | Potato | nucleus | 24.04 | 16.47 |
| PGSC0003DMT400044270 | Potato | cytosol | 28.22 | 10.0 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102602161 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M1BUX1 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400020716 | PGSC:PGSC0003DMG400020716 | EnsemblPlants:PGSC0003DMT400053397 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF19 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000296F291 | RefSeq:XP_006349273.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020716]
Coordinates
chr1:+:79735167..79737037
Molecular Weight (calculated)
32436.7 Da
IEP (calculated)
7.744
GRAVY (calculated)
-0.796
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPSQDHED MPIPINSTYG HMIHHDPTPP NNTNHIIPPS MNGPPIDAPP VATAADHHVP FKKMIRYKEC LKNHAASMGG NATDGCGEFM PSGEEGTIEA
101: LICSACNCHR NFHRKEIEGD QQLQLPSSCD CFHHLNNRGG STKKVYLGHN HHKTSLGPEP FGTIIPTRPI IPPHHQMIMS YNMGSLPNSE SEEHDQDHHH
201: IGGIMAMARP LHHVKKRFRT KFTQEQKDKM LNFAEKVGWK IQKQEEGVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNDS IPNENQV
101: LICSACNCHR NFHRKEIEGD QQLQLPSSCD CFHHLNNRGG STKKVYLGHN HHKTSLGPEP FGTIIPTRPI IPPHHQMIMS YNMGSLPNSE SEEHDQDHHH
201: IGGIMAMARP LHHVKKRFRT KFTQEQKDKM LNFAEKVGWK IQKQEEGVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNDS IPNENQV
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.