Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G086300.1 | Wheat | nucleus | 93.77 | 96.66 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 94.51 | 95.47 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 89.03 | 85.0 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 66.08 | 63.55 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 34.16 | 60.62 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 33.92 | 60.18 |
| KXG28111 | Sorghum | nucleus | 59.1 | 60.15 |
| Zm00001d049000_P001 | Maize | plastid | 62.59 | 59.76 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 35.16 | 58.51 |
| GSMUA_Achr10P... | Banana | nucleus | 35.16 | 58.26 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 29.43 | 57.0 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 32.67 | 56.22 |
| KRG92484 | Soybean | nucleus | 24.94 | 52.63 |
| PGSC0003DMT400053397 | Potato | nucleus | 29.93 | 41.81 |
| Solyc01g102980.2.1 | Tomato | nucleus | 29.93 | 41.38 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 9.73 | 40.62 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 9.73 | 40.62 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 29.18 | 39.39 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 8.98 | 38.71 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 21.7 | 38.67 |
| VIT_07s0130g00240.t01 | Wine grape | nucleus | 18.45 | 37.37 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 8.73 | 37.23 |
| Bra026830.1-P | Field mustard | nucleus | 28.93 | 36.94 |
| CDY53549 | Canola | nucleus | 28.93 | 36.94 |
| CDX81638 | Canola | nucleus | 28.93 | 36.83 |
| Bra026589.1-P | Field mustard | nucleus | 27.43 | 36.67 |
| CDY09363 | Canola | nucleus | 27.18 | 36.58 |
| AT1G14440.1 | Thale cress | nucleus | 28.43 | 36.54 |
| CDY41692 | Canola | nucleus | 27.18 | 36.33 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 16.71 | 36.22 |
| Bra026219.1-P | Field mustard | nucleus | 27.93 | 36.13 |
| CDY45257 | Canola | nucleus | 27.93 | 36.01 |
| AT2G02540.2 | Thale cress | nucleus | 27.43 | 35.48 |
| CDY39311 | Canola | nucleus | 26.68 | 34.97 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 20.2 | 34.47 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 19.45 | 33.05 |
| TraesCS2A01G305400.1 | Wheat | nucleus | 21.95 | 29.83 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 19.7 | 27.62 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 22.94 | 24.02 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 25.94 | 22.37 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF42 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | EnsemblPlantsGene:TraesCS4A01G226800 | EnsemblPlants:TraesCS4A01G226800.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | TIGR:cd00086 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:535034849..535036054
Molecular Weight (calculated)
42184.1 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.566
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIVQLQRR RTEASAAAAS ASARGILPDR EGRMDLSVPR GEFPIPMHQH AAASPYGGIG GGGVAVADHA MELHHDHANH NGQSQAQDMP SPPAAASEDS
101: SGKKRAAAIA GGAGGPPVKY RECLKNHAAA IGGNATDGCG EFMPSGEEGS LEALKCSACG CHRNFHRKEL DDFDGDSCAS HGYGYGYGHH AVRRLLGPAV
201: PHHHKSSGGL LVTADHYGAY AAARALPPPP PPPLGHHHQI IMPLNMIQTS ESDEMDGSGG IMGDGRGGLA SGGGGGGSSS SKKRFRTKFT AEQKGRMLEF
301: AENVGWRLQK LDDAMVQHFC QEIGVKRRVL KVWMHNNKHN LASRPPPTSP TPPQSQSMPL AMSMPMPLGM SMPMQVPPSQ PGPSGHRGPS SPRAQGELKL
401: D
101: SGKKRAAAIA GGAGGPPVKY RECLKNHAAA IGGNATDGCG EFMPSGEEGS LEALKCSACG CHRNFHRKEL DDFDGDSCAS HGYGYGYGHH AVRRLLGPAV
201: PHHHKSSGGL LVTADHYGAY AAARALPPPP PPPLGHHHQI IMPLNMIQTS ESDEMDGSGG IMGDGRGGLA SGGGGGGSSS SKKRFRTKFT AEQKGRMLEF
301: AENVGWRLQK LDDAMVQHFC QEIGVKRRVL KVWMHNNKHN LASRPPPTSP TPPQSQSMPL AMSMPMPLGM SMPMQVPPSQ PGPSGHRGPS SPRAQGELKL
401: D
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.