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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G087700.1
TraesCS1A01G418600.1
TraesCS1B01G106800.1
TraesCS1B01G448600.1
TraesCS1D01G064300.1
TraesCS1D01G426300.1
TraesCS3A01G226100.1
TraesCS3A01G308700.1
TraesCS3B01G258400.1
TraesCS3D01G224100.1
TraesCS4A01G226800.1
TraesCS4B01G089700.1
TraesCS4D01G086300.1
TraesCS5A01G227100.1
TraesCS5A01G246500.1
TraesCS5B01G225700.1
TraesCS5B01G243800.1
TraesCS5D01G234600.1
TraesCS5D01G253100.1
TraesCS6A01G273700.1
TraesCS6B01G301000.1
TraesCS6D01G253700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75240.1 TraesCS4A01G226800.1 AT1G14440.1 16428600
AT1G75240.1 TraesCS4B01G089700.1 AT1G14440.1 16428600
AT1G75240.1 TraesCS4D01G086300.1 AT1G14440.1 16428600
AT1G75240.1 TraesCS1A01G418600.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS1B01G448600.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS1D01G426300.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS3A01G226100.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS3B01G258400.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS3D01G224100.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS6A01G273700.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS6B01G301000.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS6D01G253700.1 AT1G75240.1 16428600
AT1G75240.1 TraesCS1A01G418600.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS1B01G448600.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS1D01G426300.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS3A01G226100.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS3B01G258400.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS3D01G224100.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS6A01G273700.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS6B01G301000.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS6D01G253700.1 AT3G50890.1 16428600
AT1G75240.1 TraesCS1A01G087700.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS1B01G106800.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS1D01G064300.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS3A01G308700.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS5A01G227100.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS5B01G225700.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS5D01G234600.1 AT5G15210.1 16428600
AT1G75240.1 TraesCS5A01G246500.1 AT5G65410.1 16428600
AT1G75240.1 TraesCS5B01G243800.1 AT5G65410.1 16428600
AT1G75240.1 TraesCS5D01G253100.1 AT5G65410.1 16428600
AT2G18350.1 TraesCS4A01G226800.1 AT1G14440.1 16428600
AT2G18350.1 TraesCS4B01G089700.1 AT1G14440.1 16428600
AT2G18350.1 TraesCS4D01G086300.1 AT1G14440.1 16428600
AT2G18350.1 TraesCS5A01G246500.1 AT5G65410.1 16428600
AT2G18350.1 TraesCS5B01G243800.1 AT5G65410.1 16428600
AT2G18350.1 TraesCS5D01G253100.1 AT5G65410.1 16428600
AT3G50890.1 TraesCS4A01G226800.1 AT1G14440.1 16428600
AT3G50890.1 TraesCS4B01G089700.1 AT1G14440.1 16428600
AT3G50890.1 TraesCS4D01G086300.1 AT1G14440.1 16428600
AT3G50890.1 TraesCS1A01G418600.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS1B01G448600.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS1D01G426300.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS3A01G226100.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS3B01G258400.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS3D01G224100.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS6A01G273700.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS6B01G301000.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS6D01G253700.1 AT1G75240.1 16428600
AT3G50890.1 TraesCS1A01G087700.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS1B01G106800.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS1D01G064300.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS3A01G308700.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS5A01G227100.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS5B01G225700.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS5D01G234600.1 AT5G15210.1 16428600
AT3G50890.1 TraesCS5A01G246500.1 AT5G65410.1 16428600
AT3G50890.1 TraesCS5B01G243800.1 AT5G65410.1 16428600
AT3G50890.1 TraesCS5D01G253100.1 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G253700.1 Wheat nucleus 95.88 95.05
TraesCS6A01G273700.1 Wheat nucleus 93.49 92.69
HORVU6Hr1G069090.1 Barley nucleus 82.86 82.86
Os02t0706600-00 Rice nucleus 60.74 65.57
Zm00001d017784_P001 Maize nucleus 56.62 62.59
KXG30914 Sorghum nucleus 53.58 60.84
Zm00001d051573_P001 Maize nucleus 57.05 58.97
TraesCS3B01G258400.1 Wheat nucleus 22.78 45.26
TraesCS1B01G448600.1 Wheat nucleus 23.43 42.86
GSMUA_Achr2P23010_001 Banana nucleus 26.03 41.24
GSMUA_Achr10P... Banana nucleus 23.64 41.13
TraesCS5B01G141400.1 Wheat cytosol 8.03 39.36
TraesCS3B01G484100.1 Wheat cytosol 8.03 38.54
TraesCS5B01G226000.1 Wheat mitochondrion 7.59 37.63
TraesCS5B01G243800.1 Wheat nucleus 22.99 35.69
CDX73775 Canola nucleus 16.05 34.42
Bra036852.1-P Field mustard nucleus 16.05 33.79
CDX77960 Canola nucleus 16.05 33.79
CDY37252 Canola nucleus 18.87 33.33
CDY62531 Canola nucleus 18.87 33.08
AT3G50890.1 Thale cress nucleus 17.79 32.93
VIT_18s0001g12580.t01 Wine grape nucleus 22.34 32.59
CDX90679 Canola nucleus 17.14 32.51
PGSC0003DMT400009581 Potato nucleus 19.74 32.04
CDY70550 Canola nucleus 17.79 31.91
CDY28987 Canola nucleus 16.92 31.84
CDY70108 Canola nucleus 17.79 30.94
Bra037224.1-P Field mustard nucleus 17.79 30.94
CDY45419 Canola nucleus 19.31 30.9
Solyc04g080490.2.1 Tomato nucleus 19.09 30.34
Bra008185.1-P Field mustard nucleus 19.31 30.27
AT2G18350.1 Thale cress nucleus 17.14 30.15
CDY71124 Canola nucleus 16.7 29.96
KRH69909 Soybean nucleus 21.69 29.94
CDX73152 Canola nucleus 19.31 29.77
TraesCS2B01G322200.1 Wheat nucleus 18.87 29.69
KRH08258 Soybean nucleus 21.04 29.48
Bra015857.1-P Field mustard nucleus 19.31 29.47
KRH76785 Soybean nucleus 20.17 29.34
TraesCS4B01G050800.1 Wheat cytosol, mitochondrion, nucleus 14.97 29.24
CDX85886 Canola nucleus 18.22 28.57
Solyc02g085160.1.1 Tomato nucleus 18.0 28.33
CDX68137 Canola nucleus 18.22 28.28
KRH28682 Soybean nucleus 20.61 28.27
Bra003759.1-P Field mustard nucleus 18.0 28.23
AT1G75240.1 Thale cress nucleus 18.66 27.83
PGSC0003DMT400009033 Potato nucleus 18.0 27.48
Bra012882.1-P Field mustard nucleus 15.18 26.42
TraesCS4B01G089700.1 Wheat nucleus 22.56 26.2
TraesCS1B01G106800.1 Wheat nucleus 14.97 23.79
TraesCS5B01G225700.1 Wheat nucleus 18.87 22.31
VIT_04s0023g01880.t01 Wine grape nucleus 18.66 19.86
Protein Annotations
EnsemblPlants:TraesCS6B01G301000.1EnsemblPlantsGene:TraesCS6B01G301000Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456InterPro:ZF_HD_homeobox_Cys/His_dimerncoils:Coil
PANTHER:PTHR31948PANTHER:PTHR31948:SF11PFAM:PD125774PFAM:PF04770PFscan:PS51523SEG:seg
SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566MapMan:15.5.3.13::
Description
No Description!
Coordinates
chr6B:-:539194701..539196453
Molecular Weight (calculated)
50381.0 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.979
Length
461 amino acids
Sequence
(BLAST)
001: MEYKRSSHVE EDEELEEEEE EEDDEEEEEE EEDEEGAMRD RRHQHQHPHH HRHHYTTAPA TAAPPHHLHL HGQAPQVLGS PAAAASSPPS LMEAAAFSRP
101: LLPPNSSLVS SPPPPPQAPP GFLLPQHQHP HRRRVDRERE KERTLEAPGE AHRQQQQPQP QHQQRHQEPQ PQHQQRHQEP ARNGVLGGGT MPPPPPTLAI
201: MTGGATRAPG EHGGVSGPEP LPWRYRECLR NHAARMGAHV LDGCGEFMPS PGDGPAALAC AACGCHRSFH RREPVVMVPS PSPSPASAVV SPSATPAGAN
301: SRLMPLLLAP PHMQQKRPHV PASPMSAPAA LAESSSEELR APPPPPPPQA QAAVGGSASA PPAPSKKRFR TKFTPEQKER MLEFAHRVGW RVQKPDGGVV
401: DAFCAQVGVP RRVLKVWMHN NKHLAKTSAT SPQPLPPLHH DPSPPHHQHH PAPPHQQQHG A
Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.