CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	KXG23238	AT1G14440.1	16428600
AT1G75240.1	KXG28111	AT1G14440.1	16428600
AT1G75240.1	KXG30914	AT1G75240.1	16428600
AT1G75240.1	OQU78488	AT1G75240.1	16428600
AT1G75240.1	KXG30914	AT3G50890.1	16428600
AT1G75240.1	OQU78488	AT3G50890.1	16428600
AT1G75240.1	EES15050	AT5G15210.1	16428600
AT1G75240.1	KXG35632	AT5G15210.1	16428600
AT1G75240.1	OQU86730	AT5G15210.1	16428600
AT1G75240.1	EER96888	AT5G65410.1	16428600
AT1G75240.1	EES15144	AT5G65410.1	16428600
AT2G18350.1	KXG23238	AT1G14440.1	16428600
AT2G18350.1	KXG28111	AT1G14440.1	16428600
AT2G18350.1	EER96888	AT5G65410.1	16428600
AT2G18350.1	EES15144	AT5G65410.1	16428600
AT3G50890.1	KXG23238	AT1G14440.1	16428600
AT3G50890.1	KXG28111	AT1G14440.1	16428600
AT3G50890.1	KXG30914	AT1G75240.1	16428600
AT3G50890.1	OQU78488	AT1G75240.1	16428600
AT3G50890.1	EES15050	AT5G15210.1	16428600
AT3G50890.1	KXG35632	AT5G15210.1	16428600
AT3G50890.1	OQU86730	AT5G15210.1	16428600
AT3G50890.1	EER96888	AT5G65410.1	16428600
AT3G50890.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051573_P001	Maize	nucleus	86.7	78.92
Os02t0706600-00	Rice	nucleus	62.07	59.02
TraesCS6D01G253700.1	Wheat	nucleus	62.32	54.41
TraesCS6A01G273700.1	Wheat	nucleus	61.82	53.98
TraesCS6B01G301000.1	Wheat	nucleus	60.84	53.58
EES16563	Sorghum	cytosol	9.11	40.22
GSMUA_Achr10P...	Banana	nucleus	24.88	38.11
GSMUA_Achr2P23010_001	Banana	nucleus	27.09	37.8
EES07913	Sorghum	cytosol	9.11	37.76
CDX73775	Canola	nucleus	17.24	32.56
Bra036852.1-P	Field mustard	nucleus	17.49	32.42
CDX77960	Canola	nucleus	17.49	32.42
PGSC0003DMT400009581	Potato	nucleus	22.66	32.39
OQU78488	Sorghum	plastid	29.31	31.9
CDY37252	Canola	nucleus	20.44	31.8
CDY62531	Canola	nucleus	20.44	31.56
EES15144	Sorghum	nucleus	23.89	31.19
EER96888	Sorghum	nucleus	23.15	31.13
CDX90679	Canola	nucleus	18.47	30.86
Solyc04g080490.2.1	Tomato	nucleus	21.92	30.69
AT3G50890.1	Thale cress	nucleus	18.72	30.52
CDY70550	Canola	nucleus	19.21	30.35
CDY70108	Canola	nucleus	19.46	29.81
CDY28987	Canola	nucleus	17.98	29.8
KXG23238	Sorghum	nucleus	23.89	29.57
HORVU6Hr1G069070.1	Barley	plastid	20.44	29.54
CDY45419	Canola	nucleus	20.94	29.51
Bra037224.1-P	Field mustard	nucleus	19.21	29.43
VIT_18s0001g12580.t01	Wine grape	nucleus	22.91	29.43
CDY71124	Canola	nucleus	18.47	29.18
KXG25227	Sorghum	mitochondrion	9.11	29.13
EER93559	Sorghum	cytosol, mitochondrion, nucleus	16.75	29.06
AT2G18350.1	Thale cress	nucleus	18.72	29.01
CDX85886	Canola	nucleus	20.94	28.91
CDX73152	Canola	nucleus	21.18	28.76
KRH76785	Soybean	nucleus	22.41	28.71
Bra008185.1-P	Field mustard	nucleus	20.69	28.57
Bra003759.1-P	Field mustard	nucleus	20.44	28.23
KXG35630	Sorghum	nucleus	7.64	28.18
Bra015857.1-P	Field mustard	nucleus	20.94	28.15
CDX68137	Canola	nucleus	20.44	27.95
Solyc02g085160.1.1	Tomato	nucleus	19.7	27.3
KRH69909	Soybean	nucleus	22.41	27.25
AT1G75240.1	Thale cress	nucleus	20.44	26.86
OQU86730	Sorghum	nucleus	17.49	26.79
KRH28682	Soybean	nucleus	21.92	26.49
KRH08258	Soybean	nucleus	21.43	26.44
PGSC0003DMT400009033	Potato	nucleus	19.46	26.16
Bra012882.1-P	Field mustard	nucleus	16.5	25.28
KXG28111	Sorghum	nucleus	23.89	24.62
KXG35632	Sorghum	nucleus	21.92	23.36
EES15050	Sorghum	cytosol	20.2	21.03
VIT_04s0023g01880.t01	Wine grape	nucleus	20.44	19.17

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A194YRQ3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:Homeodomain_ZF_HD	InterPro:IPR001356
InterPro:IPR006456	EnsemblPlants:KXG30914	ProteinID:KXG30914	ProteinID:KXG30914.1	PFAM:PD125774	PFAM:PF04770
PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF11	EnsemblPlantsGene:SORBI_3004G266800	SUPFAM:SSF46689	TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566	UniParc:UPI0007F31E45	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:61121294..61123365

Molecular Weight (calculated)

43484.7 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.791

Length

406 amino acids

Sequence
(BLAST)

001: MEYKRSSHVE EEEEEDEEEE EEDEEEEEEE DEEARSHRYT TAAAAAAPVG APQQQQQQPP LPPPGFLPAH RQPPHQLHPR KVERDRDRAA GAQQQPQVRR
101: HQEPARNGVL GGGGGGGGGA APPSAASTLG LVSVGPVVEA AQWRYRECLR NHAARLGAHV LDGCCEFMPS GSDGAAALAC AACCCHRSFH RREAIPGGVA
201: AAVAVSPSPV TPTAGAGANS SRVMPLLLAP PHMHTRPPHV PASPASAPAA LTESSSEELR VPAPAHPAAP ATTHPPHAQV AVGGSASAPP APSKKRFRTK
301: FTAEQKDRMR EFAHRVGWRI HKPDADAVDA FCAQVGVSRR VLKVWMHNNK HLARIPPSPP SSHQPPPLLP PHHHDHHPPP PPPPHHIHHH HPPPPPPPPP
401: QQQHDA

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.