Factsheet for GSMUA_Achr2P23010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	63.92	70.19
GSMUA_Achr6P17420_001	Banana	nucleus	29.55	41.55
GSMUA_Achr6P28870_001	Banana	nucleus	31.62	40.71
GSMUA_Achr7P19060_001	Banana	nucleus	28.18	39.81
GSMUA_Achr3P31090_001	Banana	nucleus	38.49	39.58
GSMUA_Achr3P16680_001	Banana	nucleus	31.27	39.06
GSMUA_Achr1P13300_001	Banana	nucleus	30.24	38.94
GSMUA_Achr3P20390_001	Banana	nucleus	27.49	38.65
GSMUA_Achr9P08090_001	Banana	nucleus	31.96	38.59
GSMUA_Achr8P27010_001	Banana	nucleus	41.58	37.69
GSMUA_Achr10P...	Banana	nucleus	31.27	37.6
GSMUA_Achr10P...	Banana	nucleus	29.21	37.12
GSMUA_Achr7P25600_001	Banana	nucleus	42.96	36.02
GSMUA_Achr6P30650_001	Banana	mitochondrion	11.68	35.79
GSMUA_Achr6P02170_001	Banana	nucleus	28.18	35.5
GSMUA_Achr4P07850_001	Banana	nucleus	40.21	35.35
GSMUA_AchrUn_...	Banana	cytosol	11.0	34.41
GSMUA_Achr5P05500_001	Banana	nucleus	27.49	33.61
CDX73775	Canola	nucleus	24.74	33.49
CDX77960	Canola	nucleus	24.74	32.88
Bra036852.1-P	Field mustard	nucleus	24.74	32.88
GSMUA_AchrUn_...	Banana	nucleus	28.18	32.8
GSMUA_Achr6P02700_001	Banana	nucleus	26.8	32.77
GSMUA_Achr4P14910_001	Banana	nucleus	37.11	32.73
CDY37252	Canola	nucleus	29.21	32.57
CDY62531	Canola	nucleus	29.21	32.32
GSMUA_Achr6P22120_001	Banana	nucleus	43.3	31.66
AT3G50890.1	Thale cress	nucleus	26.8	31.33
PGSC0003DMT400009581	Potato	nucleus	29.9	30.63
Bra003759.1-P	Field mustard	nucleus	30.93	30.61
CDY45419	Canola	nucleus	30.24	30.56
CDY70550	Canola	nucleus	26.8	30.35
CDX68137	Canola	nucleus	30.93	30.3
Bra015857.1-P	Field mustard	nucleus	31.27	30.13
CDX73152	Canola	nucleus	30.93	30.1
CDX90679	Canola	nucleus	25.09	30.04
Solyc04g080490.2.1	Tomato	nucleus	29.9	30.0
GSMUA_Achr6P27240_001	Banana	plastid	39.52	29.95
CDX85886	Canola	nucleus	30.24	29.93
CDY70108	Canola	nucleus	27.15	29.81
AT2G18350.1	Thale cress	nucleus	26.8	29.77
Bra037224.1-P	Field mustard	nucleus	26.8	29.43
Solyc02g085160.1.1	Tomato	nucleus	29.55	29.35
Bra008185.1-P	Field mustard	nucleus	29.55	29.25
GSMUA_Achr10P...	Banana	nucleus	26.12	29.12
VIT_18s0001g12580.t01	Wine grape	nucleus	31.27	28.8
CDY28987	Canola	nucleus	24.05	28.57
Os02t0706600-00	Rice	nucleus	41.92	28.57
Zm00001d017784_P001	Maize	nucleus	40.89	28.54
AT1G75240.1	Thale cress	nucleus	30.24	28.48
CDY71124	Canola	nucleus	24.74	28.02
PGSC0003DMT400009033	Potato	nucleus	28.52	27.48
KXG30914	Sorghum	nucleus	37.8	27.09
KRH76785	Soybean	nucleus	29.21	26.81
KRH08258	Soybean	nucleus	30.24	26.75
Zm00001d051573_P001	Maize	nucleus	40.55	26.46
KRH69909	Soybean	nucleus	30.24	26.35
TraesCS6B01G301000.1	Wheat	nucleus	41.24	26.03
TraesCS6D01G253700.1	Wheat	nucleus	41.24	25.81
TraesCS6A01G273700.1	Wheat	nucleus	40.89	25.59
KRH28682	Soybean	nucleus	29.21	25.3
Bra012882.1-P	Field mustard	nucleus	22.34	24.53
GSMUA_Achr6P24230_001	Banana	nucleus	18.56	24.22
HORVU6Hr1G069090.1	Barley	nucleus	36.77	23.21
GSMUA_Achr3P19060_001	Banana	nucleus	18.56	22.5
VIT_04s0023g01880.t01	Wine grape	nucleus	29.55	19.86
HORVU6Hr1G069070.1	Barley	plastid	17.53	18.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr2G23010_001	EnsemblPlants:GSMUA_Achr2P23010_001	EnsemblPlants:GSMUA_Achr2T23010_001	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD
InterPro:IPR006456	UniProt:M0SAE2	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00029586B7	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

Putative ZF-HD homeobox protein At4g24660 [Source:GMGC_GENE;Acc:GSMUA_Achr2G23010_001]

Coordinates

chr2:-:21867405..21868346

Molecular Weight (calculated)

32087.6 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.675

Length

291 amino acids

Sequence
(BLAST)

001: MEVRGQELQE QEKIYNPTPL QQSAAFTMPL PSSTLLHYAT EARGGTGDAR NGMASLIHNP TPTSAPALAS ALGSGGRSNS TTAAATALLP ATDTDAALRY
101: RECLRNHAAS LGGHILDGCC EFMPRSDDAL KCAACGCHRS FHRRDTDMNS PLRDLQNATH GRLFGSAGIL LHTGASVGAA TESSTEELML GAVPQQRFTV
201: SKKRFRTKFT AEQKERMMAF AEKVGWRMQK QHEAAVEQFC GEVGVSRQVL KVWMHNNKNA LRKQQQQEEE EEEEEEEVEE QQQHHHEMPE A

Best Arabidopsis Sequence Match ( AT2G18350.1 )
(BLAST)

001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL

Arabidopsis Description

ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.