Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P02700_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74660.1 | GSMUA_Achr10P... | AT5G15210.1 | 21245844 |
| AT1G74660.1 | GSMUA_Achr6P02700_001 | AT5G15210.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18477 | Soybean | cytosol, mitochondrion | 45.16 | 51.22 |
| AT1G18835.1 | Thale cress | mitochondrion | 48.39 | 51.14 |
| Os08t0438100-01 | Rice | cytosol | 50.54 | 50.54 |
| KRH63346 | Soybean | cytosol, mitochondrion | 47.31 | 49.44 |
| KRH54551 | Soybean | cytosol, mitochondrion | 47.31 | 49.44 |
| KRH56913 | Soybean | cytosol | 41.94 | 49.37 |
| KRH03476 | Soybean | cytosol | 41.94 | 49.37 |
| AT3G28917.1 | Thale cress | mitochondrion | 52.69 | 49.0 |
| AT1G74660.1 | Thale cress | mitochondrion | 52.69 | 48.04 |
| KRG93529 | Soybean | cytosol, mitochondrion | 48.39 | 46.39 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 45.16 | 44.21 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 44.09 | 44.09 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 44.09 | 44.09 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 44.09 | 44.09 |
| Zm00001d020459_P001 | Maize | mitochondrion | 45.16 | 37.84 |
| Zm00001d032177_P001 | Maize | mitochondrion | 48.39 | 37.82 |
| VIT_08s0056g01130.t01 | Wine grape | nucleus | 53.76 | 37.04 |
| KXG35630 | Sorghum | nucleus | 43.01 | 36.36 |
| KXG25227 | Sorghum | mitochondrion | 48.39 | 35.43 |
| Zm00001d050452_P001 | Maize | mitochondrion | 47.31 | 34.65 |
| CDY46298 | Canola | cytosol | 20.43 | 22.62 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 45.16 | 20.39 |
| Bra039615.1-P | Field mustard | cytosol | 38.71 | 19.89 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 43.01 | 19.32 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 43.01 | 19.32 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 47.31 | 19.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.54 | 18.8 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 46.24 | 18.07 |
| GSMUA_Achr10P... | Banana | nucleus | 46.24 | 17.77 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 43.01 | 17.7 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 41.94 | 17.26 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 43.01 | 17.17 |
| GSMUA_Achr10P... | Banana | nucleus | 41.94 | 17.03 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 44.09 | 17.01 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 39.78 | 15.42 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 35.48 | 14.8 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 34.41 | 13.45 |
| GSMUA_Achr10P... | Banana | nucleus | 36.56 | 12.83 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 38.71 | 12.72 |
| GSMUA_Achr10P... | Banana | nucleus | 32.26 | 11.49 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 34.41 | 11.0 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 36.56 | 10.59 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 37.63 | 10.57 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 36.56 | 10.3 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 37.63 | 10.09 |
| PGSC0003DMT400044269 | Potato | nucleus | 43.01 | 9.55 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 37.63 | 8.79 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 34.41 | 8.33 |
| Solyc09g089550.2.1 | Tomato | nucleus | 45.16 | 5.22 |
| PGSC0003DMT400044270 | Potato | cytosol | 43.01 | 4.94 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP14420_001 | EnsemblPlants:GSMUA_AchrUn_randomT14420_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG14420_001 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF7 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | TIGRFAMs:TIGR01566 | UniParc:UPI000296DBEC |
| UniProt:M0U951 | MapMan:15.5.3.13 | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14420_001]
Coordinates
chrchrUn_random:-:68149159..68149440
Molecular Weight (calculated)
10031.8 Da
IEP (calculated)
8.505
GRAVY (calculated)
-0.589
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MGLQHEPQKT SSSGPVVKKE RSVVRYKECR KNHAANVGGY AVDGCLEFMA AGEEGTSDAL RCAACNCHRS FHRREVETVT AVCGCSPGSS SRR
001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA
101: NA
Arabidopsis Description
MIF1Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.