Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0438400-01 | |
| Os09t0414600-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74660.1 | Os08t0438400-01 | AT5G15210.1 | 21245844 |
| AT1G74660.1 | Os09t0414600-02 | AT5G15210.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032177_P001 | Maize | mitochondrion | 75.27 | 58.82 |
| KXG25227 | Sorghum | mitochondrion | 79.57 | 58.27 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 56.99 | 56.99 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 56.99 | 56.99 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 55.91 | 55.91 |
| Zm00001d050452_P001 | Maize | mitochondrion | 74.19 | 54.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.54 | 50.54 |
| KRH54551 | Soybean | cytosol, mitochondrion | 46.24 | 48.31 |
| KRH63346 | Soybean | cytosol, mitochondrion | 46.24 | 48.31 |
| KRH03476 | Soybean | cytosol | 39.78 | 46.84 |
| KRH56913 | Soybean | cytosol | 39.78 | 46.84 |
| Os11t0128300-01 | Rice | cytosol, plastid | 52.69 | 46.67 |
| AT3G28917.1 | Thale cress | mitochondrion | 48.39 | 45.0 |
| Os12t0124500-01 | Rice | cytosol, plastid | 50.54 | 44.76 |
| AT1G18835.1 | Thale cress | mitochondrion | 41.94 | 44.32 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 45.16 | 44.21 |
| KRH18477 | Soybean | cytosol, mitochondrion | 38.71 | 43.9 |
| KRG93529 | Soybean | cytosol, mitochondrion | 44.09 | 42.27 |
| AT1G74660.1 | Thale cress | mitochondrion | 45.16 | 41.18 |
| VIT_08s0056g01130.t01 | Wine grape | nucleus | 46.24 | 31.85 |
| Os09t0414600-02 | Rice | nucleus | 34.41 | 29.36 |
| CDY46298 | Canola | cytosol | 19.35 | 21.43 |
| Bra039615.1-P | Field mustard | cytosol | 37.63 | 19.34 |
| Os09t0466400-01 | Rice | nucleus | 44.09 | 14.7 |
| Os01t0635550-00 | Rice | nucleus | 36.56 | 14.66 |
| Os08t0479400-01 | Rice | nucleus | 44.09 | 14.14 |
| Os05t0579300-01 | Rice | nucleus | 37.63 | 13.73 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 33.33 | 13.03 |
| Os04t0434500-00 | Rice | nucleus | 34.41 | 11.27 |
| PGSC0003DMT400044269 | Potato | nucleus | 44.09 | 9.79 |
| Os08t0438400-01 | Rice | plastid | 33.33 | 9.17 |
| Os02t0706600-00 | Rice | nucleus | 38.71 | 8.43 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 37.63 | 8.39 |
| Solyc09g089550.2.1 | Tomato | nucleus | 44.09 | 5.09 |
| PGSC0003DMT400044270 | Potato | cytosol | 44.09 | 5.06 |
| Os12t0208900-00 | Rice | nucleus | 2.15 | 0.9 |
Protein Annotations
| EnsemblPlants:Os08t0438100-01 | EnsemblPlantsGene:Os08g0438100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0046872 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF27 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | ProteinID:BAT05604.1 | SEG:seg |
| TIGRFAMs:TIGR01566 | UniParc:UPI0000DD9534 | UniProt:A0A0P0XG26 | MapMan:15.5.3.13 | : | : |
Description
Similar to ZF-HD homeobox protein. (Os08t0438100-01)
Coordinates
chr8:+:21280711..21281328
Molecular Weight (calculated)
9736.2 Da
IEP (calculated)
7.666
GRAVY (calculated)
-0.360
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: RVRYGECRRN HAARMGGHAV DGCREFLAEG EEGTGGALRC AACGCHRSFH RRVVVVQQCC ACDTAAAAAA AGGWEWRDCS PESSSSASST TAS
1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN
Arabidopsis Description
MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.