Factsheet for Os05t0579300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0635550-00
Os02t0706600-00
Os05t0579300-01
Os08t0438400-01
Os08t0479400-01
Os09t0414600-02
Os09t0466400-01
Os11t0243300-01
Os12t0208900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	Os11t0243300-01	AT1G14440.1	16428600
AT1G75240.1	Os12t0208900-00	AT1G14440.1	16428600
AT1G75240.1	Os01t0635550-00	AT1G75240.1	16428600
AT1G75240.1	Os02t0706600-00	AT1G75240.1	16428600
AT1G75240.1	Os05t0579300-01	AT1G75240.1	16428600
AT1G75240.1	Os01t0635550-00	AT3G50890.1	16428600
AT1G75240.1	Os02t0706600-00	AT3G50890.1	16428600
AT1G75240.1	Os05t0579300-01	AT3G50890.1	16428600
AT1G75240.1	Os08t0438400-01	AT5G15210.1	16428600
AT1G75240.1	Os09t0414600-02	AT5G15210.1	16428600
AT1G75240.1	Os08t0479400-01	AT5G65410.1	16428600
AT1G75240.1	Os09t0466400-01	AT5G65410.1	16428600
AT2G18350.1	Os11t0243300-01	AT1G14440.1	16428600
AT2G18350.1	Os12t0208900-00	AT1G14440.1	16428600
AT2G18350.1	Os08t0479400-01	AT5G65410.1	16428600
AT2G18350.1	Os09t0466400-01	AT5G65410.1	16428600
AT3G50890.1	Os11t0243300-01	AT1G14440.1	16428600
AT3G50890.1	Os12t0208900-00	AT1G14440.1	16428600
AT3G50890.1	Os01t0635550-00	AT1G75240.1	16428600
AT3G50890.1	Os02t0706600-00	AT1G75240.1	16428600
AT3G50890.1	Os05t0579300-01	AT1G75240.1	16428600
AT3G50890.1	Os08t0438400-01	AT5G15210.1	16428600
AT3G50890.1	Os09t0414600-02	AT5G15210.1	16428600
AT3G50890.1	Os08t0479400-01	AT5G65410.1	16428600
AT3G50890.1	Os09t0466400-01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009674_P001	Maize	nucleus	62.35	66.53
TraesCS1A01G418600.1	Wheat	nucleus	56.47	64.0
HORVU1Hr1G091470.1	Barley	nucleus	58.04	62.98
TraesCS1D01G426300.1	Wheat	nucleus	61.18	62.4
TraesCS1B01G448600.1	Wheat	nucleus	61.18	61.9
Os01t0635550-00	Rice	nucleus	48.24	53.02
OQU78488	Sorghum	plastid	69.8	47.72
Os08t0438100-01	Rice	cytosol	13.73	37.63
Os11t0128300-01	Rice	cytosol, plastid	14.9	36.19
Os12t0124500-01	Rice	cytosol, plastid	14.51	35.24
Bra036852.1-P	Field mustard	nucleus	29.41	34.25
CDX77960	Canola	nucleus	29.41	34.25
Os09t0414600-02	Rice	nucleus	14.51	33.95
CDX73775	Canola	nucleus	28.24	33.49
AT3G50890.1	Thale cress	nucleus	32.16	32.93
CDX90679	Canola	nucleus	31.37	32.92
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	30.59	32.77
PGSC0003DMT400009581	Potato	nucleus	36.08	32.39
Os09t0466400-01	Rice	nucleus	34.51	31.54
CDY28987	Canola	nucleus	30.2	31.43
CDY37252	Canola	nucleus	32.16	31.42
CDY62531	Canola	nucleus	32.16	31.18
Os08t0479400-01	Rice	nucleus	35.29	31.03
Solyc04g080490.2.1	Tomato	nucleus	35.29	31.03
CDY70550	Canola	nucleus	30.2	29.96
CDY70108	Canola	nucleus	30.98	29.81
Bra037224.1-P	Field mustard	nucleus	30.59	29.43
AT2G18350.1	Thale cress	nucleus	29.8	29.01
Os04t0434500-00	Rice	nucleus	32.16	28.87
CDX85886	Canola	nucleus	32.94	28.57
Bra003759.1-P	Field mustard	nucleus	32.94	28.57
VIT_18s0001g12580.t01	Wine grape	nucleus	35.29	28.48
Solyc02g085160.1.1	Tomato	nucleus	32.55	28.33
CDX68137	Canola	nucleus	32.94	28.28
CDY71124	Canola	nucleus	28.24	28.02
Bra008185.1-P	Field mustard	nucleus	32.16	27.89
Bra015857.1-P	Field mustard	nucleus	32.94	27.81
PGSC0003DMT400009033	Potato	nucleus	32.94	27.81
CDY45419	Canola	nucleus	31.37	27.78
CDX73152	Canola	nucleus	32.16	27.42
KRH08258	Soybean	nucleus	35.29	27.36
KRH69909	Soybean	nucleus	35.69	27.25
KRH76785	Soybean	nucleus	33.73	27.13
Os02t0706600-00	Rice	nucleus	45.1	26.93
Bra012882.1-P	Field mustard	nucleus	27.45	26.42
Os08t0438400-01	Rice	plastid	34.9	26.33
AT1G75240.1	Thale cress	nucleus	31.76	26.21
GSMUA_Achr3P19060_001	Banana	nucleus	23.92	25.42
GSMUA_Achr6P24230_001	Banana	nucleus	21.96	25.11
KRH28682	Soybean	nucleus	32.94	25.0
Os12t0208900-00	Rice	nucleus	21.18	24.32
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	36.08	22.06
VIT_04s0023g01880.t01	Wine grape	nucleus	33.73	19.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:4339713	ProteinID:AAD39591.1	ProteinID:AAU10695.1	EMBL:AK111350
ProteinID:BAF18333.1	ProteinID:BAS95507.1	ProteinID:EEE64811.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlantsGene:Os05g0579300	EnsemblPlants:Os05t0579300-01
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF30	UniProt:Q688U3
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000042ABB6	RefSeq:XP_015639557.1	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

zinc finger homeodomain class homeobox transcription factor 6Homeodomain-related domain containing protein. (Os05t0579300-01)

Coordinates

chr5:+:28835774..28836869

Molecular Weight (calculated)

27960.7 Da

IEP (calculated)

8.842

GRAVY (calculated)

-0.934

Length

255 amino acids

Sequence
(BLAST)

001: MEFRGHDEPV DEMGVAYGRT PPSSSSSPAA SASAGNGAGA AEVRYHECLR NHAAAMGGHV VDGCREFMPM PGDAADALKC AACGCHRSFH RKDDGQQQQQ
101: LRLLIPSPPT PRVPLLMPPP QPQPHPHPQH PYLHPPFPYH HTPSGSGGTT TESSSEERGP PSSSAAAAQG RRKRFRTKFT PEQKEQMLAF AERVGWRMQK
201: QDEALVEQFC AQVGVRRQVF KVWMHNNKSS IGSSSGGGSR RQPQEQQSQQ QQQQQ

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.