Factsheet for Bra036852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50890.1	Bra026219.1-P	AT1G14440.1	16428600
AT3G50890.1	Bra026830.1-P	AT1G14440.1	16428600
AT3G50890.1	Bra004399.1-P	AT1G69600.1	16428600
AT3G50890.1	Bra007869.1-P	AT1G69600.1	16428600
AT3G50890.1	Bra008185.1-P	AT1G75240.1	16428600
AT3G50890.1	Bra015857.1-P	AT1G75240.1	16428600
AT3G50890.1	Bra025363.1-P	AT3G28920.1	16428600
AT3G50890.1	Bra039038.1-P	AT3G28920.1	16428600
AT3G50890.1	Bra008712.1-P	AT5G15210.1	16428600
AT3G50890.1	Bra025644.1-P	AT5G39760.1	16428600
AT3G50890.1	Bra024382.1-P	AT5G65410.1	16428600
AT3G50890.1	Bra031859.1-P	AT5G65410.1	16428600
AT3G50890.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77960	Canola	nucleus	100.0	100.0
AT3G50890.1	Thale cress	nucleus	72.15	63.45
Bra012882.1-P	Field mustard	nucleus	67.12	55.47
Bra031051.1-P	Field mustard	mitochondrion	19.18	47.73
Bra025688.1-P	Field mustard	mitochondrion	18.26	45.45
Bra016538.1-P	Field mustard	mitochondrion	17.81	44.32
Bra015898.1-P	Field mustard	mitochondrion	17.81	41.49
Bra003791.1-P	Field mustard	mitochondrion	18.26	41.24
Bra039039.1-P	Field mustard	mitochondrion	17.35	38.78
Bra010485.1-P	Field mustard	nucleus	36.53	38.1
Bra025362.1-P	Field mustard	mitochondrion	17.35	38.0
Bra013822.1-P	Field mustard	nucleus	38.81	37.78
Bra006657.1-P	Field mustard	nucleus	27.85	33.52
Bra037816.1-P	Field mustard	nucleus	36.07	32.64
Bra037224.1-P	Field mustard	nucleus	38.36	31.7
Zm00001d009674_P001	Maize	nucleus	33.33	30.54
Bra008712.1-P	Field mustard	cytosol	36.53	30.42
Bra031859.1-P	Field mustard	nucleus	37.44	30.15
TraesCS3B01G258400.1	Wheat	nucleus	31.51	29.74
Bra007869.1-P	Field mustard	nucleus	31.05	29.57
Bra004399.1-P	Field mustard	nucleus	31.05	29.44
Os05t0579300-01	Rice	nucleus	34.25	29.41
TraesCS3A01G226100.1	Wheat	nucleus	31.05	28.94
TraesCS1A01G418600.1	Wheat	nucleus	29.68	28.89
Os01t0635550-00	Rice	nucleus	30.59	28.88
TraesCS3D01G224100.1	Wheat	nucleus	31.05	28.81
PGSC0003DMT400009581	Potato	nucleus	36.99	28.52
HORVU1Hr1G091470.1	Barley	nucleus	30.14	28.09
Solyc04g080490.2.1	Tomato	nucleus	36.99	27.93
Bra008185.1-P	Field mustard	nucleus	37.44	27.89
Bra026589.1-P	Field mustard	nucleus	37.9	27.67
Bra024382.1-P	Field mustard	nucleus	36.99	27.65
GSMUA_Achr3P31090_001	Banana	nucleus	35.62	27.56
Bra003759.1-P	Field mustard	nucleus	36.53	27.21
Bra039038.1-P	Field mustard	nucleus	37.9	26.86
Bra015857.1-P	Field mustard	nucleus	36.53	26.49
GSMUA_Achr10P...	Banana	nucleus	31.96	26.42
TraesCS1B01G448600.1	Wheat	nucleus	30.14	26.19
TraesCS1D01G426300.1	Wheat	nucleus	29.68	26.0
Bra025644.1-P	Field mustard	nucleus	37.44	25.87
VIT_18s0001g12580.t01	Wine grape	nucleus	36.53	25.32
GSMUA_Achr8P27010_001	Banana	nucleus	36.99	25.23
GSMUA_Achr2P23010_001	Banana	nucleus	32.88	24.74
Bra025363.1-P	Field mustard	nucleus	38.36	24.42
Bra026830.1-P	Field mustard	nucleus	34.25	23.89
GSMUA_Achr4P07850_001	Banana	nucleus	35.16	23.26
Bra026219.1-P	Field mustard	nucleus	32.88	23.23
GSMUA_Achr7P25600_001	Banana	nucleus	35.62	22.48
GSMUA_Achr4P14910_001	Banana	nucleus	33.33	22.12
Bra039615.1-P	Field mustard	cytosol	17.81	21.55
Bra027455.1-P	Field mustard	nucleus	26.94	20.56
OQU78488	Sorghum	plastid	34.7	20.38
GSMUA_Achr6P27240_001	Banana	plastid	35.16	20.05
GSMUA_Achr6P22120_001	Banana	nucleus	35.62	19.6
GSMUA_Achr6P24230_001	Banana	nucleus	19.18	18.83
Os02t0706600-00	Rice	nucleus	36.07	18.5
Zm00001d017784_P001	Maize	nucleus	33.79	17.75
KXG30914	Sorghum	nucleus	32.42	17.49
GSMUA_Achr3P19060_001	Banana	nucleus	18.72	17.08
Zm00001d051573_P001	Maize	nucleus	32.88	16.14
TraesCS6D01G253700.1	Wheat	nucleus	34.25	16.13
TraesCS6A01G273700.1	Wheat	nucleus	34.25	16.13
TraesCS6B01G301000.1	Wheat	nucleus	33.79	16.05
HORVU6Hr1G069090.1	Barley	nucleus	31.05	14.75
HORVU6Hr1G069070.1	Barley	plastid	10.5	8.19

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra036852	EnsemblPlants:Bra036852.1	EnsemblPlants:Bra036852.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4F6Z2	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF9
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002542BF9	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT3G50890 (E=4e-048) AtHB28 | AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28); DNA binding / transcription factor

Coordinates

chrA09:+:25403078..25403737

Molecular Weight (calculated)

25078.4 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.887

Length

219 amino acids

Sequence
(BLAST)

001: MEHGGKCNAI ATTTKISTKI LEAKPHTNSY PKAKPGLDPT LPPFLVKKEN HKPSSRGDQE TKYKECQKNH AVSTGGHVVD GCCEFMPGGE EGTLGALKCA
101: ACSCHRSFHR KEVYEHINST QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE EEINKFCRLV NLRRQVFKVW
201: MHNNKQAMKR NGNACNLQK

Best Arabidopsis Sequence Match ( AT3G50890.1 )
(BLAST)

001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE

Arabidopsis Description

ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.