Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G426300.1 | Wheat | nucleus | 92.44 | 83.2 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 85.33 | 81.7 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 88.89 | 79.37 |
| Os05t0579300-01 | Rice | nucleus | 64.0 | 56.47 |
| Zm00001d009674_P001 | Maize | nucleus | 55.56 | 52.3 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 51.11 | 48.94 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 16.44 | 39.36 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 16.0 | 37.5 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 16.0 | 37.5 |
| OQU78488 | Sorghum | plastid | 61.33 | 37.0 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 14.22 | 34.41 |
| CDY37252 | Canola | nucleus | 34.67 | 29.89 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 24.44 | 29.73 |
| AT3G50890.1 | Thale cress | nucleus | 32.89 | 29.72 |
| CDX77960 | Canola | nucleus | 28.89 | 29.68 |
| Bra036852.1-P | Field mustard | nucleus | 28.89 | 29.68 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 31.11 | 29.66 |
| CDY62531 | Canola | nucleus | 34.67 | 29.66 |
| CDX90679 | Canola | nucleus | 31.56 | 29.22 |
| PGSC0003DMT400009581 | Potato | nucleus | 36.44 | 28.87 |
| CDX73775 | Canola | nucleus | 27.56 | 28.84 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 37.78 | 28.62 |
| CDY70550 | Canola | nucleus | 32.44 | 28.4 |
| CDY70108 | Canola | nucleus | 33.33 | 28.3 |
| Solyc04g080490.2.1 | Tomato | nucleus | 36.44 | 28.28 |
| Bra037224.1-P | Field mustard | nucleus | 32.89 | 27.92 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 39.11 | 27.85 |
| CDY28987 | Canola | nucleus | 30.22 | 27.76 |
| AT2G18350.1 | Thale cress | nucleus | 32.0 | 27.48 |
| CDX85886 | Canola | nucleus | 35.56 | 27.21 |
| CDX68137 | Canola | nucleus | 35.56 | 26.94 |
| Bra003759.1-P | Field mustard | nucleus | 35.11 | 26.87 |
| CDY71124 | Canola | nucleus | 30.67 | 26.85 |
| Bra015857.1-P | Field mustard | nucleus | 36.0 | 26.82 |
| CDY45419 | Canola | nucleus | 34.22 | 26.74 |
| Bra008185.1-P | Field mustard | nucleus | 34.67 | 26.53 |
| CDX73152 | Canola | nucleus | 35.11 | 26.42 |
| Solyc02g085160.1.1 | Tomato | nucleus | 33.33 | 25.6 |
| TraesCS2A01G305400.1 | Wheat | nucleus | 33.33 | 25.42 |
| AT1G75240.1 | Thale cress | nucleus | 34.22 | 24.92 |
| PGSC0003DMT400009033 | Potato | nucleus | 33.33 | 24.83 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 24.0 | 24.22 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 25.78 | 24.17 |
| KRH08258 | Soybean | nucleus | 34.22 | 23.4 |
| Bra012882.1-P | Field mustard | nucleus | 27.56 | 23.4 |
| KRH69909 | Soybean | nucleus | 34.67 | 23.35 |
| KRH76785 | Soybean | nucleus | 32.44 | 23.03 |
| KRH28682 | Soybean | nucleus | 32.89 | 22.02 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 44.89 | 21.72 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 38.67 | 21.7 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 27.56 | 21.68 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 36.44 | 21.41 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 33.78 | 17.55 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G418600.1 | EnsemblPlantsGene:TraesCS1A01G418600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF30 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:575807774..575808514
Molecular Weight (calculated)
24927.8 Da
IEP (calculated)
9.438
GRAVY (calculated)
-1.140
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTGPEHAA GTPPGTRSPS DASSGNSGEA RYRECLRNHA AAQGGHAVDG CGEFMPSSAH DLLRCAACGC HRSFHRRDDG QQQQHPRLFL PAPGATSTTP
101: TPRAPPFAYN PHHQHYQRTP SGGGTTTESS SEEPDPGPPS TSAPGQGHGQ AQRRKRFRTR FTAEQREQML ALAERVGWRM LKQDEALVEQ LCAQAGVRRQ
201: VFKVWMHNNK HHRRQPESQQ QQQKQ
101: TPRAPPFAYN PHHQHYQRTP SGGGTTTESS SEEPDPGPPS TSAPGQGHGQ AQRRKRFRTR FTAEQREQML ALAERVGWRM LKQDEALVEQ LCAQAGVRRQ
201: VFKVWMHNNK HHRRQPESQQ QQQKQ
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
Arabidopsis Description
ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.