Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G089700.1 | Wheat | nucleus | 96.66 | 94.71 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 96.66 | 93.77 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 91.52 | 84.76 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 68.12 | 63.55 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 35.22 | 60.62 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 34.96 | 60.18 |
| KXG28111 | Sorghum | nucleus | 60.41 | 59.64 |
| Zm00001d049000_P001 | Maize | plastid | 63.5 | 58.81 |
| GSMUA_Achr10P... | Banana | nucleus | 36.5 | 58.68 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 36.25 | 58.51 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 30.33 | 57.0 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 33.68 | 56.22 |
| KRG92484 | Soybean | nucleus | 25.71 | 52.63 |
| PGSC0003DMT400053397 | Potato | nucleus | 30.59 | 41.46 |
| Solyc01g102980.2.1 | Tomato | nucleus | 30.59 | 41.03 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 30.08 | 39.53 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 9.25 | 38.71 |
| VIT_07s0130g00240.t01 | Wine grape | nucleus | 19.28 | 37.88 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 9.0 | 37.23 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 23.91 | 37.2 |
| Bra026589.1-P | Field mustard | nucleus | 28.53 | 37.0 |
| CDY53549 | Canola | nucleus | 29.82 | 36.94 |
| Bra026830.1-P | Field mustard | nucleus | 29.82 | 36.94 |
| CDY09363 | Canola | nucleus | 28.28 | 36.91 |
| CDX81638 | Canola | nucleus | 29.82 | 36.83 |
| CDY41692 | Canola | nucleus | 28.28 | 36.67 |
| AT1G14440.1 | Thale cress | nucleus | 29.31 | 36.54 |
| Bra026219.1-P | Field mustard | nucleus | 28.79 | 36.13 |
| CDY45257 | Canola | nucleus | 28.79 | 36.01 |
| AT2G02540.2 | Thale cress | nucleus | 28.53 | 35.81 |
| CDY39311 | Canola | nucleus | 27.51 | 34.97 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 21.08 | 34.75 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 14.65 | 32.95 |
| TraesCS2D01G303900.1 | Wheat | nucleus | 22.62 | 30.03 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 23.39 | 23.51 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 26.22 | 21.94 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF42 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | EnsemblPlantsGene:TraesCS4D01G086300 | EnsemblPlants:TraesCS4D01G086300.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | TIGR:cd00086 | SEG:seg |
Description
No Description!
Coordinates
chr4D:+:61851477..61852646
Molecular Weight (calculated)
41038.6 Da
IEP (calculated)
8.150
GRAVY (calculated)
-0.570
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIVQLQRR RTEAAASARG ILPDREERMD LSVPRGEFPI PMHAAASPYG GIGGGGVAVA DHAMELHHDH ANHNGQSQSQ AQDMPSPPAA VSEDSSGKKR
101: AAAIAGGAGG PAVKYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALK CSACGCHRNF HRKELDDFDG DSCASHGYGY GHHAVRRLLG PAVPHHHKSS
201: GGLLVTADHY GAYAAARALP PPPPPPLGHH HQIIMPLNMI QTSESDEMDG SGGGGIMGDG RGGLASGGGG GSSSSKKRFR TKFTAEQKGR MLEFAENVGW
301: RLQKLDDAMV QHFCQEIGVK RRVLKVWMHN NKHNLASRPL PTSPAQPQSQ SMPLAMSMPM PMQVPPSQPG PSGHRGPSSP HAQGELKLD
101: AAAIAGGAGG PAVKYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALK CSACGCHRNF HRKELDDFDG DSCASHGYGY GHHAVRRLLG PAVPHHHKSS
201: GGLLVTADHY GAYAAARALP PPPPPPLGHH HQIIMPLNMI QTSESDEMDG SGGGGIMGDG RGGLASGGGG GSSSSKKRFR TKFTAEQKGR MLEFAENVGW
301: RLQKLDDAMV QHFCQEIGVK RRVLKVWMHN NKHNLASRPL PTSPAQPQSQ SMPLAMSMPM PMQVPPSQPG PSGHRGPSSP HAQGELKLD
001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
Arabidopsis Description
ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.