CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	KXG23238	AT1G14440.1	16428600
AT1G14440.1	KXG28111	AT1G14440.1	16428600
AT1G14440.1	KXG30914	AT1G75240.1	16428600
AT1G14440.1	OQU78488	AT1G75240.1	16428600
AT1G14440.1	KXG30914	AT2G18350.1	16428600
AT1G14440.1	OQU78488	AT2G18350.1	16428600
AT1G14440.1	KXG30914	AT3G50890.1	16428600
AT1G14440.1	OQU78488	AT3G50890.1	16428600
AT1G14440.1	EES15050	AT5G15210.1	16428600
AT1G14440.1	KXG35632	AT5G15210.1	16428600
AT1G14440.1	OQU86730	AT5G15210.1	16428600
AT1G14440.1	EER96888	AT5G65410.1	16428600
AT1G14440.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049000_P001	Maize	plastid	85.28	80.0
GSMUA_Achr6P28870_001	Banana	nucleus	35.03	61.06
TraesCS4D01G086300.1	Wheat	nucleus	59.64	60.41
GSMUA_Achr1P13300_001	Banana	nucleus	34.52	60.18
GSMUA_Achr10P...	Banana	nucleus	36.8	59.92
GSMUA_Achr9P08090_001	Banana	nucleus	36.29	59.34
TraesCS4B01G089700.1	Wheat	nucleus	59.64	59.19
TraesCS4A01G226800.1	Wheat	nucleus	60.15	59.1
GSMUA_Achr3P16680_001	Banana	nucleus	34.77	58.8
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	61.68	58.27
GSMUA_Achr6P17420_001	Banana	nucleus	29.44	56.04
HORVU4Hr1G015250.6	Barley	nucleus, plastid	58.63	55.0
KRG92484	Soybean	nucleus	24.87	51.58
KXG23238	Sorghum	nucleus	40.1	48.17
EES16563	Sorghum	cytosol	10.15	43.48
Solyc01g102980.2.1	Tomato	nucleus	29.7	40.34
PGSC0003DMT400053397	Potato	nucleus	29.19	40.07
EES07913	Sorghum	cytosol	9.9	39.8
EER96888	Sorghum	nucleus	29.95	39.07
EES15144	Sorghum	nucleus	30.71	38.91
AT1G14440.1	Thale cress	nucleus	29.44	37.18
CDX81638	Canola	nucleus	29.7	37.14
Bra026219.1-P	Field mustard	nucleus	29.19	37.1
Bra026589.1-P	Field mustard	nucleus	28.17	37.0
CDY45257	Canola	nucleus	29.19	36.98
CDY53549	Canola	nucleus	29.44	36.94
Bra026830.1-P	Field mustard	nucleus	29.44	36.94
CDY09363	Canola	nucleus	27.92	36.91
VIT_07s0130g00240.t01	Wine grape	nucleus	18.53	36.87
CDY41692	Canola	nucleus	27.92	36.67
AT2G02540.2	Thale cress	nucleus	28.68	36.45
CDY39311	Canola	nucleus	28.17	36.27
EER93559	Sorghum	cytosol, mitochondrion, nucleus	19.8	33.33
KXG35630	Sorghum	nucleus	9.14	32.73
KXG25227	Sorghum	mitochondrion	10.15	31.5
OQU86730	Sorghum	nucleus	18.02	26.79
KXG35632	Sorghum	nucleus	23.6	24.41
OQU78488	Sorghum	plastid	23.1	24.4
EES15050	Sorghum	cytosol	24.11	24.36
KXG30914	Sorghum	nucleus	24.62	23.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A1B6PR18	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	ProteinID:KXG28110.1	EnsemblPlants:KXG28111
ProteinID:KXG28111	ProteinID:KXG28111.1	ProteinID:KXG28112.1	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523
PANTHER:PTHR31948	PANTHER:PTHR31948:SF42	EnsemblPlantsGene:SORBI_3005G086700	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566
UniParc:UPI0003C73199	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:12133896..12144365

Molecular Weight (calculated)

40834.3 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.538

Length

394 amino acids

Sequence
(BLAST)

001: MDLSGTQGEL AIPMHANVAS PYGGGGGGGH VLQQLHGRGD HGSNNNGQQS PVSAAALTPS PPVAAVEETE SSGKKRGPVA GASSAVKYRE CLKNHAAAIG
101: GNATDGCGEF MPSGEEGSLE ALKCSACGCH RNFHRKEVDD DDDDVYAAAD GFSGLGLGHG HRAARRLLAP AMAHPHHKTG GGGGLLISGA DPYGAYAASR
201: ALPPALPPPP GHGHAHHHQY VMPLNMMHTS ESDEMEGGGG GAVAGCVDAA RGGGSGGSSS SRKRFRTKFT PEQKARMLEF AERVGWRLQR LDDGMVQAFC
301: QEIGVKRRVL KVWMHNNKHN LATKRLEASP AAAQEQQAMA PGMASPPPPP PPQHHMPLHM PAAVMPPPPP PLPTQTGPSC HRGGPGSPLP LKLE

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.