CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	CDX81638	AT1G14440.1	16428600
AT1G14440.1	CDY39311	AT1G14440.1	16428600
AT1G14440.1	CDY45257	AT1G14440.1	16428600
AT1G14440.1	CDY53549	AT1G14440.1	16428600
AT1G14440.1	CDX95914	AT1G69600.1	16428600
AT1G14440.1	CDY01760	AT1G69600.1	16428600
AT1G14440.1	CDY28566	AT1G69600.1	16428600
AT1G14440.1	CDY44079	AT1G69600.1	16428600
AT1G14440.1	CDX73152	AT1G75240.1	16428600
AT1G14440.1	CDY37252	AT1G75240.1	16428600
AT1G14440.1	CDY45419	AT1G75240.1	16428600
AT1G14440.1	CDY62531	AT1G75240.1	16428600
AT1G14440.1	CDY70108	AT2G18350.1	16428600
AT1G14440.1	CDY70550	AT2G18350.1	16428600
AT1G14440.1	CDY71124	AT2G18350.1	16428600
AT1G14440.1	CDX85230	AT3G28920.1	16428600
AT1G14440.1	CDX86403	AT3G28920.1	16428600
AT1G14440.1	CDY00104	AT3G28920.1	16428600
AT1G14440.1	CDY20008	AT3G28920.1	16428600
AT1G14440.1	CDX73775	AT3G50890.1	16428600
AT1G14440.1	CDX77960	AT3G50890.1	16428600
AT1G14440.1	CDX90679	AT3G50890.1	16428600
AT1G14440.1	CDY28987	AT3G50890.1	16428600
AT1G14440.1	CDX69541	AT5G15210.1	16428600
AT1G14440.1	CDX85059	AT5G15210.1	16428600
AT1G14440.1	CDX74428	AT5G39760.1	16428600
AT1G14440.1	CDY56033	AT5G39760.1	16428600
AT1G14440.1	CDX81284	AT5G65410.1	16428600
AT1G14440.1	CDY14559	AT5G65410.1	16428600
AT1G14440.1	CDY33960	AT5G65410.1	16428600
AT1G14440.1	CDY37827	AT5G65410.1	16428600
AT1G14440.1	CDY54719	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45257	Canola	nucleus	96.41	94.86
Bra026219.1-P	Field mustard	nucleus	95.75	94.52
AT1G14440.1	Thale cress	nucleus	84.97	83.33
CDX81638	Canola	nucleus	85.29	82.86
CDY53549	Canola	nucleus	84.64	82.48
CDY09363	Canola	nucleus	52.94	54.36
CDY41692	Canola	nucleus	52.61	53.67
GSMUA_Achr6P28870_001	Banana	nucleus	36.6	49.56
GSMUA_Achr1P13300_001	Banana	nucleus	36.27	49.12
GSMUA_Achr6P17420_001	Banana	nucleus	32.68	48.31
CDY21695	Canola	mitochondrion	13.73	47.73
VIT_12s0035g01880.t01	Wine grape	nucleus	43.46	47.33
GSMUA_Achr9P08090_001	Banana	nucleus	36.93	46.89
GSMUA_Achr10P...	Banana	nucleus	36.93	46.69
CDX83807	Canola	mitochondrion	13.4	46.59
CDX81897	Canola	mitochondrion	13.4	46.59
GSMUA_Achr3P16680_001	Banana	nucleus	34.64	45.49
KRH01880	Soybean	nucleus	41.5	44.41
CDY19248	Canola	mitochondrion	12.75	44.32
CDY26722	Canola	mitochondrion	12.75	44.32
CDX96695	Canola	mitochondrion	12.75	44.32
KRH51275	Soybean	nucleus	40.85	44.17
CDX85228	Canola	mitochondrion, nucleus	13.07	43.96
CDX86404	Canola	mitochondrion	13.07	43.96
CDX73105	Canola	mitochondrion	12.75	41.49
CDX96558	Canola	mitochondrion	12.75	41.49
PGSC0003DMT400053397	Potato	nucleus	38.89	41.46
Solyc01g102980.2.1	Tomato	nucleus	39.22	41.38
CDY08945	Canola	nucleus	27.78	40.48
CDX88950	Canola	nucleus	27.45	40.0
CDY34299	Canola	nucleus	29.09	39.56
CDY03431	Canola	nucleus	28.76	39.46
CDY24844	Canola	nucleus	26.8	39.05
CDY00105	Canola	mitochondrion	12.42	38.78
CDY20009	Canola	mitochondrion	12.42	38.78
CDX68172	Canola	mitochondrion	12.09	38.14
CDX85849	Canola	mitochondrion	12.09	38.14
CDY54719	Canola	nucleus	27.78	35.27
CDY37252	Canola	nucleus	29.74	34.87
CDX88760	Canola	nucleus	20.59	34.81
CDY62531	Canola	nucleus	29.74	34.6
CDX81284	Canola	nucleus	28.43	34.12
CDY69628	Canola	nucleus	19.93	34.08
CDX95914	Canola	nucleus	24.84	32.9
CDY37827	Canola	nucleus	29.09	32.72
CDY33960	Canola	nucleus	28.76	32.71
CDY70550	Canola	nucleus	27.12	32.3
CDY45419	Canola	nucleus	30.39	32.29
CDY28566	Canola	nucleus	26.47	31.76
CDX73775	Canola	nucleus	22.22	31.63
CDX77960	Canola	nucleus	22.55	31.51
CDY44079	Canola	nucleus	26.14	31.37
CDY14559	Canola	nucleus	29.74	31.06
CDX85886	Canola	nucleus	29.74	30.95
CDY70108	Canola	nucleus	26.8	30.94
CDY01760	Canola	nucleus	25.49	30.47
CDX73152	Canola	nucleus	29.74	30.43
CDX68137	Canola	nucleus	29.41	30.3
CDX90679	Canola	nucleus	23.86	30.04
CDX69541	Canola	nucleus	25.16	29.28
KXG23238	Sorghum	nucleus	31.37	29.27
CDY28987	Canola	nucleus	23.2	28.98
CDY71124	Canola	nucleus	23.86	28.4
KXG28111	Sorghum	nucleus	36.27	28.17
CDY20008	Canola	nucleus	25.49	27.76
TraesCS4D01G086300.1	Wheat	nucleus	34.97	27.51
Zm00001d041780_P001	Maize	nucleus	31.05	27.22
TraesCS4B01G089700.1	Wheat	nucleus	34.97	26.95
TraesCS4A01G226800.1	Wheat	nucleus	34.97	26.68
Zm00001d049000_P001	Maize	plastid	35.95	26.19
CDY46298	Canola	cytosol	7.19	26.19
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	35.62	26.14
Os12t0208900-00	Rice	nucleus	18.95	26.13
CDY00104	Canola	nucleus	26.14	25.64
HORVU4Hr1G015250.6	Barley	nucleus, plastid	34.64	25.24
CDX74428	Canola	nucleus	26.14	25.24
CDX85059	Canola	nucleus	19.28	24.79
CDY56033	Canola	nucleus	21.57	23.83
CDX85230	Canola	nucleus	25.82	23.3
CDX86403	Canola	nucleus	25.82	22.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:A0A078HNY9	UniProt:A0A078HNY9	EnsemblPlants:CDY39311	ProteinID:CDY39311
ProteinID:CDY39311.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00067727001
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523
PANTHER:PTHR31948	PANTHER:PTHR31948:SF19	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0004EEF77A
InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:	:

Description

BnaC05g10680DBnaC05g10680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNY9]

Coordinates

chrLK032445:+:88212..89132

Molecular Weight (calculated)

34423.5 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.852

Length

306 amino acids

Sequence
(BLAST)

001: MEIASQEDHD IRIPLSTTFV GSGGGHGHMI HHHHDHHASD SAPPTHNHNS ITTTQPPQMQ LHGSGHGNSN DHHHHVGYNA IIKKPMIKYK ECLKNHAAAM
101: GGNATDGCGE FMPSGADGSI EAFTCSVCNC HRNFHRKEVE GETTATAISS YHQPPPPRKL MVNHHNIRSA MPHQMIMPIG VSNYRYMHNL ESGDFMEQDG
201: VTTASRPPPY NQKKRFRTKF TPDQKEKMLS FAEKVGWKIQ RQEDCVVQRL CEEIGVKRRV LKVWMHNNKL HFSNKNTSNN INLEGNDNDK INNVNNVDVS
301: GNNDMI

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.