CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89637
KRH01172
KRH01880
KRH18475
KRH40099
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	KRH01880	AT1G14440.1	16428600
AT1G14440.1	KRH51275	AT1G14440.1	16428600
AT1G14440.1	KRH01172	AT3G28920.1	16428600
AT1G14440.1	KRH18475	AT3G28920.1	16428600
AT1G14440.1	KRH40099	AT3G28920.1	16428600
AT1G14440.1	KRG89637	AT5G15210.1	16428600
AT1G14440.1	KRH50585	AT5G15210.1	16428600
AT1G14440.1	KRH70724	AT5G15210.1	16428600
AT1G14440.1	KRH74865	AT5G15210.1	16428600
AT1G14440.1	KRH01172	AT5G39760.1	16428600
AT1G14440.1	KRH18475	AT5G39760.1	16428600
AT1G14440.1	KRH40099	AT5G39760.1	16428600
AT1G14440.1	KRH69650	AT5G65410.1	16428600
AT1G14440.1	KRH74513	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01880	Soybean	nucleus	88.34	87.41
VIT_12s0035g01880.t01	Wine grape	nucleus	74.91	75.44
PGSC0003DMT400053397	Potato	nucleus	61.84	60.98
Solyc01g102980.2.1	Tomato	nucleus	61.84	60.34
GSMUA_Achr1P13300_001	Banana	nucleus	48.06	60.18
GSMUA_Achr6P28870_001	Banana	nucleus	47.35	59.29
GSMUA_Achr10P...	Banana	nucleus	49.12	57.44
GSMUA_Achr9P08090_001	Banana	nucleus	48.76	57.26
KRG92484	Soybean	nucleus	38.16	56.84
GSMUA_Achr6P17420_001	Banana	nucleus	40.99	56.04
GSMUA_Achr3P16680_001	Banana	nucleus	45.23	54.94
KRH45571	Soybean	cytosol, nucleus	32.86	47.69
KRH45572	Soybean	nucleus	33.22	47.47
KRH45573	Soybean	nucleus	33.22	47.47
KRH03476	Soybean	cytosol	13.07	46.84
KRH56913	Soybean	cytosol	13.07	46.84
KRH18477	Soybean	cytosol, mitochondrion	13.43	46.34
KRH54551	Soybean	cytosol, mitochondrion	14.13	44.94
KRH63346	Soybean	cytosol, mitochondrion	14.13	44.94
KRH41884	Soybean	nucleus	24.03	44.74
KRH60587	Soybean	nucleus	23.67	44.08
KRH01145	Soybean	cytosol	11.66	44.0
KRH16820	Soybean	nucleus	39.93	43.46
AT2G02540.2	Thale cress	nucleus	47.0	42.9
AT1G14440.1	Thale cress	nucleus	47.0	42.63
CDY09363	Canola	nucleus	44.88	42.62
Bra026589.1-P	Field mustard	nucleus	44.88	42.33
CDY41692	Canola	nucleus	44.88	42.33
KRG93529	Soybean	cytosol, mitochondrion	14.49	42.27
KRH72430	Soybean	nucleus	40.28	42.22
CDX81638	Canola	nucleus	47.0	42.22
Bra026830.1-P	Field mustard	nucleus	46.64	42.04
CDY53549	Canola	nucleus	46.64	42.04
KRG99446	Soybean	nucleus	36.75	41.6
CDY45257	Canola	nucleus	45.58	41.48
KRH74513	Soybean	nucleus	37.1	41.34
Bra026219.1-P	Field mustard	nucleus	45.23	41.29
CDY39311	Canola	nucleus	44.17	40.85
KRG90132	Soybean	cytosol	28.98	40.0
KRH40100	Soybean	mitochondrion	13.43	39.58
KRH45574	Soybean	cytosol	35.69	38.7
KRH40102	Soybean	cytosol, mitochondrion	9.89	38.36
KRG90215	Soybean	cytosol	28.62	38.21
KRH52923	Soybean	nucleus	39.22	37.25
KRH62204	Soybean	nucleus	38.52	37.2
KRH44088	Soybean	nucleus	19.08	36.99
KRH69650	Soybean	nucleus	38.16	36.61
KRH76785	Soybean	nucleus	40.28	35.96
KRG90210	Soybean	nucleus	31.45	34.77
KRH28682	Soybean	nucleus	40.99	34.52
KRG90213	Soybean	nucleus	31.1	34.51
KRH71953	Soybean	nucleus	31.1	34.38
KRG90211	Soybean	cytosol	31.1	34.24
KRH40101	Soybean	mitochondrion	11.66	34.02
KRH71954	Soybean	nucleus	29.68	34.01
KRH01146	Soybean	cytosol	11.66	33.67
KRH48720	Soybean	nucleus	25.8	33.49
KRH26349	Soybean	nucleus	19.08	33.33
KRH01171	Soybean	mitochondrion	9.89	31.82
KRH38989	Soybean	nucleus, plastid	25.44	31.44
KRH69909	Soybean	nucleus	37.1	31.44
KRH08258	Soybean	nucleus	35.69	30.7
KRH70724	Soybean	nucleus	30.74	29.9
KRH74865	Soybean	nucleus	30.74	29.39
KRH26348	Soybean	nucleus	19.43	28.95
KRH26296	Soybean	nucleus	20.14	28.79
KRH01172	Soybean	nucleus	33.57	28.11
KRH18475	Soybean	nucleus	32.51	27.79
KRH40099	Soybean	nucleus, plastid	27.92	25.65
KRH50585	Soybean	nucleus	31.45	24.86
KRG89637	Soybean	nucleus	15.55	24.18

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100805652	MapMan:15.5.3.13	EMBL:ACUP02004733	EnsemblPlantsGene:GLYMA_07G271900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	UniProt:I1KNQ9
InterPro:IPR006456	EnsemblPlants:KRH51275	ProteinID:KRH51275	ProteinID:KRH51275.1	PFAM:PD125774	PFAM:PF04770
PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF19	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566
UniParc:UPI000233920E	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:44429855..44432039

Molecular Weight (calculated)

31394.2 Da

IEP (calculated)

8.137

GRAVY (calculated)

-0.809

Length

283 amino acids

Sequence
(BLAST)

001: MELSSQEGEI PIPINSSTTY GHGNGHGHGL MIHHDHNHII SSTAPSNGIP TMQQEEDHGL GSYKKVVRYR ECLKNHAAAM GGNATDGCGE FMPSGEEGTI
101: EALNCSACHC HRNFHRKEVE GEPSCDYHHL NINRRRHILG PHKNLLPPEA LGYPTAARSV PPHQMIMPYN IGGIGHHLPS ESDEQEDGGG GGGMVQLSSR
201: PISSQQQLVK KRFRTKFSQE QKDKMLNFAE KVGWKIQKQE ESVVQQFCQE IGVKRRVLKV WMHNNKHNLA KKNPPTTAAP PPP

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.