CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89637
KRG92555
KRH01172
KRH01880
KRH13792
KRH18475
KRH34236
KRH40099
KRH43662
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	KRH01880	AT1G14440.1	16428600
AT5G15210.1	KRH51275	AT1G14440.1	16428600
AT5G15210.1	KRH13792	AT1G54330.1	21245844
AT5G15210.1	KRH43662	AT1G54330.1	21245844
AT5G15210.1	KRG92555	AT2G18196.1	18974936
AT5G15210.1	KRH34236	AT2G18196.1	18974936
AT5G15210.1	KRH01172	AT3G28920.1	16428600
AT5G15210.1	KRH18475	AT3G28920.1	16428600
AT5G15210.1	KRH40099	AT3G28920.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	16428600
AT5G15210.1	KRH50585	AT5G15210.1	16428600
AT5G15210.1	KRH70724	AT5G15210.1	16428600
AT5G15210.1	KRH74865	AT5G15210.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	21245844
AT5G15210.1	KRH50585	AT5G15210.1	21245844
AT5G15210.1	KRH70724	AT5G15210.1	21245844
AT5G15210.1	KRH74865	AT5G15210.1	21245844
AT5G15210.1	KRH01172	AT5G39760.1	16428600
AT5G15210.1	KRH18475	AT5G39760.1	16428600
AT5G15210.1	KRH40099	AT5G39760.1	16428600
AT5G15210.1	KRH01172	AT5G39760.1	21245844
AT5G15210.1	KRH18475	AT5G39760.1	21245844
AT5G15210.1	KRH40099	AT5G39760.1	21245844
AT5G15210.1	KRH69650	AT5G65410.1	16428600
AT5G15210.1	KRH74513	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89637	Soybean	nucleus	46.65	91.76
KRH60587	Soybean	nucleus	20.95	49.34
KRH74865	Soybean	nucleus	40.78	49.32
KRH70724	Soybean	nucleus	38.83	47.77
Os09t0414600-02	Rice	nucleus	14.53	47.71
KRH41884	Soybean	nucleus	20.11	47.37
PGSC0003DMT400080288	Potato	nucleus	35.75	44.6
KRH03476	Soybean	cytosol	9.78	44.3
KRH56913	Soybean	cytosol	9.78	44.3
KRH18477	Soybean	cytosol, mitochondrion	10.06	43.9
Solyc05g007580.1.1	Tomato	nucleus	36.31	43.77
VIT_01s0026g02460.t01	Wine grape	nucleus	27.93	43.48
KRH63346	Soybean	cytosol, mitochondrion	10.61	42.7
KRH54551	Soybean	cytosol, mitochondrion	10.61	42.7
GSMUA_Achr6P02700_001	Banana	nucleus	28.21	42.44
KRG92484	Soybean	nucleus	22.35	42.11
AT5G15210.1	Thale cress	nucleus	31.84	42.07
Bra008712.1-P	Field mustard	cytosol	30.73	41.83
CDX69541	Canola	nucleus	30.45	41.44
KRH18475	Soybean	nucleus	37.99	41.09
KRH01172	Soybean	nucleus	38.27	40.53
KRH45571	Soybean	cytosol, nucleus	22.07	40.51
KRH45572	Soybean	nucleus	22.07	39.9
KRH45573	Soybean	nucleus	22.07	39.9
GSMUA_Achr10P...	Banana	nucleus	29.05	39.85
KRH01145	Soybean	cytosol	8.1	38.67
CDX85059	Canola	nucleus	25.14	37.82
KRG93529	Soybean	cytosol, mitochondrion	10.06	37.11
TraesCS3A01G308700.1	Wheat	nucleus	18.99	36.76
TraesCS1D01G064300.1	Wheat	mitochondrion	17.6	36.42
KRH40099	Soybean	nucleus, plastid	31.28	36.36
KRH44088	Soybean	nucleus	14.53	35.62
KRG99446	Soybean	nucleus	24.58	35.2
HORVU1Hr1G013140.1	Barley	cytosol	7.26	34.67
KRH74513	Soybean	nucleus	24.3	34.25
KRH40102	Soybean	cytosol, mitochondrion	6.98	34.25
KRH48720	Soybean	nucleus	20.67	33.95
KRH38989	Soybean	nucleus, plastid	21.23	33.19
KRH16820	Soybean	nucleus	24.02	33.08
Os08t0438400-01	Rice	plastid	31.01	32.84
KRG90132	Soybean	cytosol	18.72	32.68
KRH72430	Soybean	nucleus	24.58	32.59
KRG90215	Soybean	cytosol	19.27	32.55
KRH40100	Soybean	mitochondrion	8.66	32.29
KRH45574	Soybean	cytosol	23.18	31.8
KRH51275	Soybean	nucleus	24.86	31.45
KRH01880	Soybean	nucleus	24.86	31.12
KRH26349	Soybean	nucleus	13.97	30.86
KRH69650	Soybean	nucleus	24.86	30.17
KRH40101	Soybean	mitochondrion	8.1	29.9
Zm00001d032175_P001	Maize	cytosol	30.73	29.49
KXG35632	Sorghum	nucleus	31.28	29.4
Zm00001d005757_P001	Maize	nucleus	29.61	29.36
Zm00001d050443_P001	Maize	nucleus	29.61	28.96
Zm00001d020460_P001	Maize	nucleus	29.89	28.92
TraesCS1B01G106800.1	Wheat	nucleus	23.18	28.62
KRH01146	Soybean	cytosol	7.82	28.57
KRG90211	Soybean	cytosol	20.39	28.4
EES15050	Sorghum	cytosol	30.45	27.95
KRH71954	Soybean	nucleus	19.27	27.94
KRG90210	Soybean	nucleus	19.83	27.73
KRH71953	Soybean	nucleus	19.83	27.73
TraesCS1A01G087700.1	Wheat	nucleus	22.07	27.62
KRH52923	Soybean	nucleus	22.91	27.52
KRH62204	Soybean	nucleus	22.35	27.3
TraesCS5A01G227100.1	Wheat	nucleus	29.05	27.15
KRG90213	Soybean	nucleus	19.27	27.06
HORVU5Hr1G065740.1	Barley	nucleus	29.05	26.94
TraesCS5B01G225700.1	Wheat	nucleus	29.33	26.92
KRH26348	Soybean	nucleus	14.25	26.84
OQU86730	Sorghum	nucleus	19.83	26.79
TraesCS5D01G234600.1	Wheat	nucleus	28.77	26.61
KRH26296	Soybean	nucleus	14.53	26.26
KRH76785	Soybean	nucleus	22.91	25.87
KRH08258	Soybean	nucleus	23.18	25.23
KRH69909	Soybean	nucleus	23.46	25.15
KRH28682	Soybean	nucleus	22.63	24.11
KRH01171	Soybean	mitochondrion	5.87	23.86

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100814924	MapMan:15.5.3.13	UniProt:A0A0R0JCS9	EMBL:ACUP02004708	EnsemblPlantsGene:GLYMA_07G230200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlants:KRH50585	ProteinID:KRH50585
ProteinID:KRH50585.1	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF28
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00023C60E6	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:41055283..41056998

Molecular Weight (calculated)

39160.3 Da

IEP (calculated)

8.077

GRAVY (calculated)

-0.872

Length

358 amino acids

Sequence
(BLAST)

001: MDLTSISTHN TNTTQTLDAA NTTTKTTPPT PIPTTTPKSL SFANGTLKRH PTTTVAQPPS MVVSYKECLK NHAASIGGHA LDGCGEFMLS SSTVPSDPRS
101: LKCAACGCHR NFHRREPQEN NLNNNLKNNN PTFLNCIYTL SAPAPLSHRA MSQSTSPSLS SSPSHSQSPI SSPSPPPLSH VPPYHASAPH MLLALGSAYS
201: AEPSDEHHHH QQQQHKSFNL SMMRSENPTK KRYRTKFSKE QKEKMHSFSE KLGWRMQKGD DGLVQEFCND IGVSRGVFKV WMHNNKNTFR KKSEDGNGNA
301: NAPQSNDDDN ANGGGGGFDS DINNPYNPNS NNNDIHMKEV DDACVNNVVH VSLNEMSS

Best Arabidopsis Sequence Match ( AT1G69600.1 )
(BLAST)

001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS

Arabidopsis Description

ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.