Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42780.1 | KRH01172 | AT5G39760.1 | 16428600 |
| AT5G42780.1 | KRH18475 | AT5G39760.1 | 16428600 |
| AT5G42780.1 | KRH40099 | AT5G39760.1 | 16428600 |
| AT5G42780.1 | KRH69650 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | KRH74513 | AT5G65410.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26349 | Soybean | nucleus | 80.0 | 93.83 |
| KRH26296 | Soybean | nucleus | 85.79 | 82.32 |
| KRH44088 | Soybean | nucleus | 55.26 | 71.92 |
| KRH60587 | Soybean | nucleus | 24.74 | 30.92 |
| KRH18477 | Soybean | cytosol, mitochondrion | 13.16 | 30.49 |
| KRH56913 | Soybean | cytosol | 12.63 | 30.38 |
| KRH41884 | Soybean | nucleus | 24.21 | 30.26 |
| KRH03476 | Soybean | cytosol | 12.11 | 29.11 |
| KRG92484 | Soybean | nucleus | 26.84 | 26.84 |
| KRH63346 | Soybean | cytosol, mitochondrion | 12.11 | 25.84 |
| KRH54551 | Soybean | cytosol, mitochondrion | 12.11 | 25.84 |
| KRG93529 | Soybean | cytosol, mitochondrion | 13.16 | 25.77 |
| KRH01145 | Soybean | cytosol | 10.0 | 25.33 |
| KRH40100 | Soybean | mitochondrion | 12.11 | 23.96 |
| KRH48720 | Soybean | nucleus | 26.84 | 23.39 |
| KRH38989 | Soybean | nucleus, plastid | 27.37 | 22.71 |
| KRH45571 | Soybean | cytosol, nucleus | 23.16 | 22.56 |
| KRH45573 | Soybean | nucleus | 23.16 | 22.22 |
| KRH45572 | Soybean | nucleus | 23.16 | 22.22 |
| KRG90132 | Soybean | cytosol | 23.68 | 21.95 |
| KRH40102 | Soybean | cytosol, mitochondrion | 8.42 | 21.92 |
| AT5G42780.1 | Thale cress | nucleus | 27.37 | 21.49 |
| KRH40101 | Soybean | mitochondrion | 10.0 | 19.59 |
| KRH51275 | Soybean | nucleus | 28.95 | 19.43 |
| KRH01146 | Soybean | cytosol | 10.0 | 19.39 |
| KRG90215 | Soybean | cytosol | 21.58 | 19.34 |
| KRH01880 | Soybean | nucleus | 28.95 | 19.23 |
| KRG99446 | Soybean | nucleus | 24.21 | 18.4 |
| KRG90210 | Soybean | nucleus | 24.74 | 18.36 |
| KRG90211 | Soybean | cytosol | 24.74 | 18.29 |
| KRG90213 | Soybean | nucleus | 24.21 | 18.04 |
| KRH45574 | Soybean | cytosol | 24.74 | 18.01 |
| KRH71953 | Soybean | nucleus | 24.21 | 17.97 |
| KRH71954 | Soybean | nucleus | 23.16 | 17.81 |
| KRH74513 | Soybean | nucleus | 23.68 | 17.72 |
| KRH16820 | Soybean | nucleus | 24.21 | 17.69 |
| KRH70724 | Soybean | nucleus | 26.84 | 17.53 |
| KRH01171 | Soybean | mitochondrion | 7.89 | 17.05 |
| KRH72430 | Soybean | nucleus | 24.21 | 17.04 |
| KRH74865 | Soybean | nucleus | 26.32 | 16.89 |
| KRH01172 | Soybean | nucleus | 30.0 | 16.86 |
| KRH52923 | Soybean | nucleus | 25.26 | 16.11 |
| Bra027455.1-P | Field mustard | nucleus | 24.21 | 16.03 |
| KRH62204 | Soybean | nucleus | 24.21 | 15.7 |
| KRH69650 | Soybean | nucleus | 24.21 | 15.59 |
| KRG89637 | Soybean | nucleus | 14.21 | 14.84 |
| KRH18475 | Soybean | nucleus | 25.79 | 14.8 |
| KRH76785 | Soybean | nucleus | 24.21 | 14.51 |
| KRH50585 | Soybean | nucleus | 26.84 | 14.25 |
| KRH69909 | Soybean | nucleus | 24.74 | 14.07 |
| KRH28682 | Soybean | nucleus | 24.74 | 13.99 |
| KRH08258 | Soybean | nucleus | 24.21 | 13.98 |
| KRH40099 | Soybean | nucleus, plastid | 22.63 | 13.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EMBL:ACUP02007707 | EnsemblPlantsGene:GLYMA_12G168600 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | UniProt:K7LVE1 |
| EnsemblPlants:KRH26348 | ProteinID:KRH26348 | ProteinID:KRH26348.1 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS50071 |
| PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | UniParc:UPI0002949B73 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:32362927..32363753
Molecular Weight (calculated)
21966.3 Da
IEP (calculated)
8.884
GRAVY (calculated)
-0.602
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQNHIRSGH VHYVPPSPFY LSLSPLVQMH THPSISINLL LNFTMSDINI NHPLPTHEVV TYKECLHNHS AALDHVTYDG CVKYIAGEDA LLCACCGCRR
101: NFHHKNTIFT AEPQTQTPDQ VQEMRSKRKK RTTFSSEQKN KLIRFAESVG WKPRKEKKDE IESFCSEMGI TRRKFVVWLS NNRHQAINDA
101: NFHHKNTIFT AEPQTQTPDQ VQEMRSKRKK RTTFSSEQKN KLIRFAESVG WKPRKEKKDE IESFCSEMGI TRRKFVVWLS NNRHQAINDA
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.