CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89637
KRG92555
KRH01172
KRH01880
KRH13792
KRH18475
KRH34236
KRH40099
KRH43662
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	KRH01880	AT1G14440.1	16428600
AT5G15210.1	KRH51275	AT1G14440.1	16428600
AT5G15210.1	KRH13792	AT1G54330.1	21245844
AT5G15210.1	KRH43662	AT1G54330.1	21245844
AT5G15210.1	KRG92555	AT2G18196.1	18974936
AT5G15210.1	KRH34236	AT2G18196.1	18974936
AT5G15210.1	KRH01172	AT3G28920.1	16428600
AT5G15210.1	KRH18475	AT3G28920.1	16428600
AT5G15210.1	KRH40099	AT3G28920.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	16428600
AT5G15210.1	KRH50585	AT5G15210.1	16428600
AT5G15210.1	KRH70724	AT5G15210.1	16428600
AT5G15210.1	KRH74865	AT5G15210.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	21245844
AT5G15210.1	KRH50585	AT5G15210.1	21245844
AT5G15210.1	KRH70724	AT5G15210.1	21245844
AT5G15210.1	KRH74865	AT5G15210.1	21245844
AT5G15210.1	KRH01172	AT5G39760.1	16428600
AT5G15210.1	KRH18475	AT5G39760.1	16428600
AT5G15210.1	KRH40099	AT5G39760.1	16428600
AT5G15210.1	KRH01172	AT5G39760.1	21245844
AT5G15210.1	KRH18475	AT5G39760.1	21245844
AT5G15210.1	KRH40099	AT5G39760.1	21245844
AT5G15210.1	KRH69650	AT5G65410.1	16428600
AT5G15210.1	KRH74513	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74865	Soybean	nucleus	89.35	87.84
Os09t0414600-02	Rice	nucleus	18.56	49.54
KRH41884	Soybean	nucleus	23.71	45.39
KRH60587	Soybean	nucleus	23.71	45.39
KRH18477	Soybean	cytosol, mitochondrion	12.71	45.12
KRH03476	Soybean	cytosol	12.03	44.3
KRH56913	Soybean	cytosol	12.03	44.3
KRG89637	Soybean	nucleus	27.15	43.41
Bra008712.1-P	Field mustard	cytosol	39.18	43.35
AT5G15210.1	Thale cress	nucleus	40.21	43.17
CDX69541	Canola	nucleus	38.83	42.97
KRH63346	Soybean	cytosol, mitochondrion	13.06	42.7
KRH54551	Soybean	cytosol, mitochondrion	13.06	42.7
KRH01145	Soybean	cytosol	11.0	42.67
PGSC0003DMT400080288	Potato	nucleus	40.89	41.46
Solyc05g007580.1.1	Tomato	nucleus	41.92	41.08
GSMUA_Achr6P02700_001	Banana	nucleus	33.33	40.76
KRG92484	Soybean	nucleus	26.46	40.53
KRH45571	Soybean	cytosol, nucleus	26.46	39.49
KRG93529	Soybean	cytosol, mitochondrion	13.06	39.18
VIT_01s0026g02460.t01	Wine grape	nucleus	30.93	39.13
CDX85059	Canola	nucleus	31.96	39.08
KRH50585	Soybean	nucleus	47.77	38.83
KRH40102	Soybean	cytosol, mitochondrion	9.62	38.36
KRH45573	Soybean	nucleus	25.43	37.37
KRH45572	Soybean	nucleus	25.43	37.37
KRH44088	Soybean	nucleus	18.56	36.99
KRH18475	Soybean	nucleus	41.24	36.25
KRH01172	Soybean	nucleus	41.58	35.8
TraesCS3A01G308700.1	Wheat	nucleus	22.34	35.14
GSMUA_Achr10P...	Banana	nucleus	30.93	34.48
KRG99446	Soybean	nucleus	29.55	34.4
KRG90132	Soybean	cytosol	23.71	33.66
HORVU1Hr1G013140.1	Barley	cytosol	8.59	33.33
KRH40100	Soybean	mitochondrion	11.0	33.33
KRH74513	Soybean	nucleus	28.87	33.07
KRH48720	Soybean	nucleus	24.74	33.03
KRH40099	Soybean	nucleus, plastid	34.36	32.47
TraesCS1D01G064300.1	Wheat	mitochondrion	19.24	32.37
KRH26349	Soybean	nucleus	17.87	32.1
KRH38989	Soybean	nucleus, plastid	25.09	31.88
KRH51275	Soybean	nucleus	29.9	30.74
KRH01880	Soybean	nucleus	29.9	30.42
KRG90215	Soybean	cytosol	21.99	30.19
Os08t0438400-01	Rice	plastid	35.05	30.18
KRH16820	Soybean	nucleus	26.8	30.0
KRH72430	Soybean	nucleus	27.84	30.0
KRH40101	Soybean	mitochondrion	9.97	29.9
KRH01146	Soybean	cytosol	9.97	29.59
KRH45574	Soybean	cytosol	26.46	29.5
Zm00001d020460_P001	Maize	nucleus	37.11	29.19
Zm00001d005757_P001	Maize	nucleus	35.74	28.81
KRH62204	Soybean	nucleus	28.87	28.67
KXG35632	Sorghum	nucleus	37.46	28.61
KRH52923	Soybean	nucleus	29.21	28.52
Zm00001d050443_P001	Maize	nucleus	35.4	28.14
Zm00001d032175_P001	Maize	cytosol	35.74	27.88
KRH69650	Soybean	nucleus	28.18	27.8
KRG90210	Soybean	nucleus	24.4	27.73
OQU86730	Sorghum	nucleus	25.09	27.55
KRH71953	Soybean	nucleus	24.05	27.34
TraesCS5A01G227100.1	Wheat	nucleus	35.74	27.15
TraesCS5D01G234600.1	Wheat	nucleus	36.08	27.13
KRH76785	Soybean	nucleus	29.55	27.13
KRH71954	Soybean	nucleus	23.02	27.13
HORVU5Hr1G065740.1	Barley	nucleus	35.74	26.94
KRH26348	Soybean	nucleus	17.53	26.84
KRH26296	Soybean	nucleus	18.21	26.77
KRG90213	Soybean	nucleus	23.37	26.67
TraesCS5B01G225700.1	Wheat	nucleus	35.74	26.67
TraesCS1B01G106800.1	Wheat	nucleus	26.46	26.55
KRH08258	Soybean	nucleus	29.9	26.44
EES15050	Sorghum	cytosol	35.4	26.41
KRH69909	Soybean	nucleus	30.24	26.35
KRG90211	Soybean	cytosol	23.02	26.07
KRH28682	Soybean	nucleus	29.55	25.6
TraesCS1A01G087700.1	Wheat	nucleus	24.74	25.17
KRH01171	Soybean	mitochondrion	7.22	23.86

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100785050	MapMan:15.5.3.13	EMBL:ACUP02000791	EnsemblPlantsGene:GLYMA_02G107300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	UniProt:I1JE45
InterPro:IPR006456	EnsemblPlants:KRH70724	ProteinID:KRH70724	ProteinID:KRH70724.1	PFAM:PD125774	PFAM:PF04770
PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF28	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566
UniParc:UPI0002337880	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:10231216..10236785

Molecular Weight (calculated)

32371.2 Da

IEP (calculated)

9.735

GRAVY (calculated)

-1.180

Length

291 amino acids

Sequence
(BLAST)

001: MDLTKDTNSQ TPPQPNTTTN GSLKHHHHHP TTVSPPQQPP STTVFYKECL KNHAASIGGH ALDGCGEFMP SSSSNPNEPR SLTCAACGCH RNFHRRRDTQ
101: ENHHRSNSRP NFISFYHSPP LSRHGPGLSP TPSPMSSPSP SPPPISHHFP PSSHHFQGPI PAHGLLGLGN ENHHHHMSFN FNSSSHSTQG NTSGKKRHRT
201: KFSHEQKQKM YNFAEKLGWR MQKAEEGLVQ DFCNEIGVSR GVFKVWMHNN KNTSARNKSL EPGEKINGTG THSNNNNNHP YNTNSTNDDT H

Best Arabidopsis Sequence Match ( AT5G15210.1 )
(BLAST)

001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T

Arabidopsis Description

ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.