Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G087700.1 | Wheat | nucleus | 90.34 | 91.61 |
| HORVU1Hr1G013140.1 | Barley | cytosol | 16.55 | 64.0 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 11.38 | 34.38 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 10.69 | 32.98 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 25.86 | 31.51 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 24.48 | 30.6 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 9.66 | 30.11 |
| GSMUA_Achr10P... | Banana | nucleus | 26.21 | 29.12 |
| PGSC0003DMT400080288 | Potato | nucleus | 28.62 | 28.92 |
| AT5G15210.1 | Thale cress | nucleus | 26.21 | 28.04 |
| Solyc05g007580.1.1 | Tomato | nucleus | 28.28 | 27.61 |
| Zm00001d020460_P001 | Maize | nucleus | 34.48 | 27.03 |
| Bra008712.1-P | Field mustard | cytosol | 24.14 | 26.62 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 23.1 | 26.59 |
| KRH70724 | Soybean | nucleus | 26.55 | 26.46 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 35.52 | 26.41 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 26.55 | 26.28 |
| CDX69541 | Canola | nucleus | 23.79 | 26.24 |
| KXG35632 | Sorghum | nucleus | 34.14 | 25.98 |
| KRH74865 | Soybean | nucleus | 26.21 | 25.68 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 26.21 | 25.59 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 20.69 | 25.42 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 19.66 | 24.78 |
| KRG89637 | Soybean | nucleus | 15.52 | 24.73 |
| CDX85059 | Canola | nucleus | 19.31 | 23.53 |
| KRH50585 | Soybean | nucleus | 28.62 | 23.18 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 26.21 | 19.14 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 23.79 | 14.97 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G106800.1 | EnsemblPlantsGene:TraesCS1B01G106800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF48 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:118487555..118489362
Molecular Weight (calculated)
32185.7 Da
IEP (calculated)
7.825
GRAVY (calculated)
-0.888
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVKYPSGSV KRQAAVAPTV QEVKYNECGR NHALASGGHV VDGCGEWMPL GDLNPADASS YKCAACGCHR SFHRKVMTER SPPLAPMVET VLHGLPQRRK
101: EETPEDRLPG VDSDTNSDGT EYDSDATEYD SEATEYDDER SMPQPLQPPP VYHPVQVTQQ PPACISSGQH NFLPRALQIQ RLPAQLSPAT APPPHGVTSE
201: RKRSRTTFTT DQKLQMEELS EHLGWRLQKR DKDFIEARCH DIGVSKKVFR NWMNNKKRKP PSGHNASAAT SSTVGPSRLR LPPPPSHHQC
101: EETPEDRLPG VDSDTNSDGT EYDSDATEYD SEATEYDDER SMPQPLQPPP VYHPVQVTQQ PPACISSGQH NFLPRALQIQ RLPAQLSPAT APPPHGVTSE
201: RKRSRTTFTT DQKLQMEELS EHLGWRLQKR DKDFIEARCH DIGVSKKVFR NWMNNKKRKP PSGHNASAAT SSTVGPSRLR LPPPPSHHQC
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.