Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G246500.1 | |
| TraesCS5B01G243800.1 | |
| TraesCS5D01G253100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42780.1 | TraesCS5A01G246500.1 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | TraesCS5B01G243800.1 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | TraesCS5D01G253100.1 | AT5G65410.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 99.58 | 99.58 |
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 98.31 | 98.31 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 95.76 | 94.17 |
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 77.12 | 77.78 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 75.42 | 77.06 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 77.54 | 76.25 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 75.42 | 74.79 |
| KRH60587 | Soybean | nucleus | 30.51 | 47.37 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 30.93 | 47.1 |
| KRH41884 | Soybean | nucleus | 29.24 | 45.39 |
| PGSC0003DMT400083993 | Potato | nucleus | 30.93 | 40.78 |
| Solyc03g098060.1.1 | Tomato | nucleus | 30.93 | 40.78 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 14.41 | 35.42 |
| KRH48720 | Soybean | nucleus | 30.08 | 32.57 |
| KRH38989 | Soybean | nucleus, plastid | 30.93 | 31.88 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 11.86 | 29.79 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 31.36 | 29.37 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 27.54 | 28.02 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 34.75 | 27.99 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 11.02 | 27.96 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 30.93 | 24.58 |
| AT5G42780.1 | Thale cress | nucleus | 23.73 | 23.14 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 25.42 | 20.69 |
| Bra027455.1-P | Field mustard | nucleus | 24.58 | 20.21 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 32.63 | 19.4 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 31.78 | 19.23 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 29.24 | 14.97 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G050800.1 | EnsemblPlantsGene:TraesCS4B01G050800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | ncoils:Coil |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : |
Description
No Description!
Coordinates
chr4B:+:39289368..39290078
Molecular Weight (calculated)
24681.0 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.692
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR KAFLDGAASP GAASQHAPLM LPSPGAPPGY MHHHLAMAGP
101: SGPGVAMGGG DGGGSHSGGG SRRRTRTKFT DEQKARMLRF AERLGWRMPK REPGRAPGDD EVARFCREIG VTRQVFKVWM HNHKAGVGGS GGAGAQTSSS
201: TTRGGGGGGG GAGGMSPAMG GDGEDDEEVR GSEMCM
101: SGPGVAMGGG DGGGSHSGGG SRRRTRTKFT DEQKARMLRF AERLGWRMPK REPGRAPGDD EVARFCREIG VTRQVFKVWM HNHKAGVGGS GGAGAQTSSS
201: TTRGGGGGGG GAGGMSPAMG GDGEDDEEVR GSEMCM
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.