Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G426300.1 | Wheat | nucleus | 89.29 | 90.0 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 79.37 | 88.89 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 80.95 | 86.81 |
| Os05t0579300-01 | Rice | nucleus | 61.9 | 61.18 |
| Zm00001d009674_P001 | Maize | nucleus | 54.76 | 57.74 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 47.22 | 51.29 |
| OQU78488 | Sorghum | plastid | 61.11 | 41.29 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 14.29 | 38.3 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 14.29 | 37.5 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 11.9 | 32.26 |
| CDY37252 | Canola | nucleus | 32.54 | 31.42 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 29.37 | 31.36 |
| CDY62531 | Canola | nucleus | 32.54 | 31.18 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 36.11 | 30.64 |
| CDX77960 | Canola | nucleus | 26.19 | 30.14 |
| Bra036852.1-P | Field mustard | nucleus | 26.19 | 30.14 |
| AT3G50890.1 | Thale cress | nucleus | 29.76 | 30.12 |
| CDX90679 | Canola | nucleus | 28.57 | 29.63 |
| PGSC0003DMT400009581 | Potato | nucleus | 33.33 | 29.58 |
| CDX73775 | Canola | nucleus | 25.0 | 29.3 |
| Solyc04g080490.2.1 | Tomato | nucleus | 33.33 | 28.97 |
| CDY70108 | Canola | nucleus | 30.16 | 28.68 |
| CDY70550 | Canola | nucleus | 28.97 | 28.4 |
| Bra037224.1-P | Field mustard | nucleus | 29.76 | 28.3 |
| AT2G18350.1 | Thale cress | nucleus | 29.37 | 28.24 |
| CDX85886 | Canola | nucleus | 32.94 | 28.23 |
| CDY28987 | Canola | nucleus | 27.38 | 28.16 |
| Bra015857.1-P | Field mustard | nucleus | 33.73 | 28.15 |
| CDY45419 | Canola | nucleus | 32.14 | 28.12 |
| CDX68137 | Canola | nucleus | 32.94 | 27.95 |
| Bra003759.1-P | Field mustard | nucleus | 32.54 | 27.89 |
| Bra008185.1-P | Field mustard | nucleus | 32.54 | 27.89 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 34.92 | 27.85 |
| CDX73152 | Canola | nucleus | 32.94 | 27.76 |
| CDY71124 | Canola | nucleus | 27.78 | 27.24 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 25.4 | 26.67 |
| Solyc02g085160.1.1 | Tomato | nucleus | 30.56 | 26.28 |
| AT1G75240.1 | Thale cress | nucleus | 32.14 | 26.21 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 23.02 | 26.01 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 30.16 | 25.94 |
| PGSC0003DMT400009033 | Potato | nucleus | 30.56 | 25.5 |
| KRH08258 | Soybean | nucleus | 32.14 | 24.62 |
| KRH69909 | Soybean | nucleus | 32.54 | 24.55 |
| Bra012882.1-P | Field mustard | nucleus | 25.0 | 23.77 |
| KRH76785 | Soybean | nucleus | 29.76 | 23.66 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 42.86 | 23.43 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 36.9 | 23.43 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 26.59 | 23.1 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 35.32 | 22.82 |
| KRH28682 | Soybean | nucleus | 29.76 | 22.32 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 30.95 | 18.01 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G448600.1 | EnsemblPlantsGene:TraesCS1B01G448600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF30 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:667749720..667750478
Molecular Weight (calculated)
27592.2 Da
IEP (calculated)
9.842
GRAVY (calculated)
-0.978
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTGPEHAA GTPPGTRAPS EASSGNSGAA GSGEARYREC LRNHAAAQGG HAVDGCGEFM PSGAHDLLTC AACGCHRNFH RRDDGQKHPR LFLPAPAATP
101: TTPTPRVPLL MPPPPQHHPY AAGHPHAPPF AYNPHHYHYQ RTPSGGGTTT ESSSEEPSAV PPSTSGQGHA HGQAQRRKRF RTRFTAEQRE QMLALAERLG
201: WRMLKQDEAL VGQLCAQAGV RRQVFKVWMH NNKHHRRQPQ APQSQQQQQQ HQ
101: TTPTPRVPLL MPPPPQHHPY AAGHPHAPPF AYNPHHYHYQ RTPSGGGTTT ESSSEEPSAV PPSTSGQGHA HGQAQRRKRF RTRFTAEQRE QMLALAERLG
201: WRMLKQDEAL VGQLCAQAGV RRQVFKVWMH NNKHHRRQPQ APQSQQQQQQ HQ
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.