Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G106800.1 | Wheat | nucleus | 91.61 | 90.34 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 53.5 | 82.7 |
| HORVU1Hr1G013140.1 | Barley | cytosol | 17.13 | 65.33 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 11.54 | 34.38 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 11.54 | 34.38 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 10.84 | 32.98 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 10.14 | 31.18 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 25.87 | 31.09 |
| GSMUA_Achr10P... | Banana | nucleus | 26.57 | 29.12 |
| PGSC0003DMT400080288 | Potato | nucleus | 29.02 | 28.92 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 23.08 | 28.09 |
| Solyc05g007580.1.1 | Tomato | nucleus | 28.67 | 27.61 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 21.68 | 27.56 |
| AT5G15210.1 | Thale cress | nucleus | 25.87 | 27.31 |
| Zm00001d020460_P001 | Maize | nucleus | 34.97 | 27.03 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 36.01 | 26.89 |
| TraesCS2A01G305400.1 | Wheat | nucleus | 26.92 | 26.1 |
| KXG35632 | Sorghum | nucleus | 34.62 | 25.98 |
| Bra008712.1-P | Field mustard | cytosol | 23.78 | 25.86 |
| CDX69541 | Canola | nucleus | 23.43 | 25.48 |
| KRH70724 | Soybean | nucleus | 25.17 | 24.74 |
| KRG89637 | Soybean | nucleus | 15.73 | 24.73 |
| KRH74865 | Soybean | nucleus | 25.52 | 24.66 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 20.28 | 24.58 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 24.48 | 23.57 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 18.88 | 23.48 |
| CDX85059 | Canola | nucleus | 18.88 | 22.69 |
| KRH50585 | Soybean | nucleus | 27.62 | 22.07 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 27.62 | 19.7 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 25.17 | 15.48 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G087700.1 | EnsemblPlantsGene:TraesCS1A01G087700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF48 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 | TIGRFAMs:TIGR01566 |
| MapMan:15.5.3.13 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:75255435..75256295
Molecular Weight (calculated)
32085.9 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.873
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVKYPSGSV KKVRQAAVAP AVQEAKYNEC GRNHALASGG HVVDGCGEWM PLRDLNPADA SSYKCAACGC HRSFHRKVMT ERSPMLAPMV ETVLHGLPQR
101: RKEETPEDWL PGVDSDTNSD GMKYDSDATE YDSEGTEYDD ERSVPQPLQP PPVYHPAQVT QQLSSGQHNF LPRALQIHRL ATQLSPATAP PPHGVMLERK
201: RSRTTTDQKL RMEELSEHLG WRLQKRDKDF IEARCHDIGV SKKVFRNWMN NKKRKYPSGH NPSAAASSVV EPSRLRLPPP PSHHQC
101: RKEETPEDWL PGVDSDTNSD GMKYDSDATE YDSEGTEYDD ERSVPQPLQP PPVYHPAQVT QQLSSGQHNF LPRALQIHRL ATQLSPATAP PPHGVMLERK
201: RSRTTTDQKL RMEELSEHLG WRLQKRDKDF IEARCHDIGV SKKVFRNWMN NKKRKYPSGH NPSAAASSVV EPSRLRLPPP PSHHQC
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.