CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89637
KRG92555
KRH01172
KRH01880
KRH13792
KRH18475
KRH34236
KRH40099
KRH43662
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	KRH01880	AT1G14440.1	16428600
AT5G15210.1	KRH51275	AT1G14440.1	16428600
AT5G15210.1	KRH13792	AT1G54330.1	21245844
AT5G15210.1	KRH43662	AT1G54330.1	21245844
AT5G15210.1	KRG92555	AT2G18196.1	18974936
AT5G15210.1	KRH34236	AT2G18196.1	18974936
AT5G15210.1	KRH01172	AT3G28920.1	16428600
AT5G15210.1	KRH18475	AT3G28920.1	16428600
AT5G15210.1	KRH40099	AT3G28920.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	16428600
AT5G15210.1	KRH50585	AT5G15210.1	16428600
AT5G15210.1	KRH70724	AT5G15210.1	16428600
AT5G15210.1	KRH74865	AT5G15210.1	16428600
AT5G15210.1	KRG89637	AT5G15210.1	21245844
AT5G15210.1	KRH50585	AT5G15210.1	21245844
AT5G15210.1	KRH70724	AT5G15210.1	21245844
AT5G15210.1	KRH74865	AT5G15210.1	21245844
AT5G15210.1	KRH01172	AT5G39760.1	16428600
AT5G15210.1	KRH18475	AT5G39760.1	16428600
AT5G15210.1	KRH40099	AT5G39760.1	16428600
AT5G15210.1	KRH01172	AT5G39760.1	21245844
AT5G15210.1	KRH18475	AT5G39760.1	21245844
AT5G15210.1	KRH40099	AT5G39760.1	21245844
AT5G15210.1	KRH69650	AT5G65410.1	16428600
AT5G15210.1	KRH74513	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70724	Soybean	nucleus	87.84	89.35
Os09t0414600-02	Rice	nucleus	18.58	50.46
KRH41884	Soybean	nucleus	23.99	46.71
KRH60587	Soybean	nucleus	23.99	46.71
KRH18477	Soybean	cytosol, mitochondrion	12.5	45.12
KRG89637	Soybean	nucleus	27.7	45.05
Bra008712.1-P	Field mustard	cytosol	39.53	44.49
KRH56913	Soybean	cytosol	11.82	44.3
KRH03476	Soybean	cytosol	11.82	44.3
AT5G15210.1	Thale cress	nucleus	40.54	44.28
CDX69541	Canola	nucleus	39.19	44.11
PGSC0003DMT400080288	Potato	nucleus	42.23	43.55
Solyc05g007580.1.1	Tomato	nucleus	43.24	43.1
KRH63346	Soybean	cytosol, mitochondrion	12.84	42.7
KRH54551	Soybean	cytosol, mitochondrion	12.84	42.7
KRH01145	Soybean	cytosol	10.81	42.67
KRG92484	Soybean	nucleus	26.69	41.58
GSMUA_Achr6P02700_001	Banana	nucleus	33.11	41.18
KRH50585	Soybean	nucleus	49.32	40.78
KRH45571	Soybean	cytosol, nucleus	26.69	40.51
VIT_01s0026g02460.t01	Wine grape	nucleus	31.08	40.0
CDX85059	Canola	nucleus	32.09	39.92
KRH45573	Soybean	nucleus	26.35	39.39
KRG93529	Soybean	cytosol, mitochondrion	12.84	39.18
KRH45572	Soybean	nucleus	26.01	38.89
KRH40102	Soybean	cytosol, mitochondrion	9.46	38.36
KRH18475	Soybean	nucleus	42.23	37.76
KRH01172	Soybean	nucleus	42.57	37.28
KRH44088	Soybean	nucleus	17.91	36.3
TraesCS3A01G308700.1	Wheat	nucleus	22.3	35.68
GSMUA_Achr10P...	Banana	nucleus	31.08	35.25
KRG99446	Soybean	nucleus	29.73	35.2
HORVU1Hr1G013140.1	Barley	cytosol	8.78	34.67
KRH40099	Soybean	nucleus, plastid	35.47	34.09
KRH74513	Soybean	nucleus	29.05	33.86
KRH40100	Soybean	mitochondrion	10.81	33.33
KRG90132	Soybean	cytosol	22.97	33.17
KRH48720	Soybean	nucleus	24.32	33.03
TraesCS1D01G064300.1	Wheat	mitochondrion	19.26	32.95
KRH38989	Soybean	nucleus, plastid	25.34	32.75
KRH26349	Soybean	nucleus	17.23	31.48
KRH16820	Soybean	nucleus	27.36	31.15
KRG90215	Soybean	cytosol	22.3	31.13
KRH72430	Soybean	nucleus	28.38	31.11
KRH51275	Soybean	nucleus	29.39	30.74
KRH45574	Soybean	cytosol	27.03	30.65
Os08t0438400-01	Rice	plastid	34.8	30.47
KRH01880	Soybean	nucleus	29.39	30.42
KRH40101	Soybean	mitochondrion	9.8	29.9
KRH01146	Soybean	cytosol	9.8	29.59
Zm00001d050443_P001	Maize	nucleus	35.81	28.96
Zm00001d020460_P001	Maize	nucleus	36.15	28.92
KRH69650	Soybean	nucleus	28.72	28.81
Zm00001d005757_P001	Maize	nucleus	34.8	28.53
Zm00001d032175_P001	Maize	cytosol	35.81	28.42
KXG35632	Sorghum	nucleus	36.49	28.35
KRH62204	Soybean	nucleus	28.04	28.33
KRH52923	Soybean	nucleus	28.38	28.19
KRG90210	Soybean	nucleus	23.99	27.73
KRH76785	Soybean	nucleus	29.39	27.44
TraesCS5A01G227100.1	Wheat	nucleus	35.47	27.42
TraesCS5D01G234600.1	Wheat	nucleus	35.81	27.39
KRH71953	Soybean	nucleus	23.65	27.34
HORVU5Hr1G065740.1	Barley	nucleus	35.47	27.2
OQU86730	Sorghum	nucleus	24.32	27.17
KRH71954	Soybean	nucleus	22.64	27.13
KRH08258	Soybean	nucleus	30.07	27.05
KRH69909	Soybean	nucleus	30.41	26.95
EES15050	Sorghum	cytosol	35.47	26.92
TraesCS5B01G225700.1	Wheat	nucleus	35.47	26.92
KRG90213	Soybean	nucleus	22.97	26.67
KRH26348	Soybean	nucleus	16.89	26.32
KRH26296	Soybean	nucleus	17.57	26.26
TraesCS1B01G106800.1	Wheat	nucleus	25.68	26.21
KRG90211	Soybean	cytosol	22.64	26.07
KRH28682	Soybean	nucleus	29.39	25.89
TraesCS1A01G087700.1	Wheat	nucleus	24.66	25.52
KRH01171	Soybean	mitochondrion	7.09	23.86

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100817446	MapMan:15.5.3.13	EMBL:ACUP02000082	EnsemblPlantsGene:GLYMA_01G047900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	UniProt:I1J5R0
InterPro:IPR006456	EnsemblPlants:KRH74865	ProteinID:KRH74865	ProteinID:KRH74865.1	PFAM:PD125774	PFAM:PF04770
PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF28	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566
UniParc:UPI0002337308	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:5585129..5586802

Molecular Weight (calculated)

32853.6 Da

IEP (calculated)

8.850

GRAVY (calculated)

-1.196

Length

296 amino acids

Sequence
(BLAST)

001: MDLTKDTNTL DTNSQTPPQP FTTNGSLKDH HHHHPTTVSP PQQPPSTAVA YKECLKNHAA SIGGHALDGC GEFMPSSFSN PNEPRSLTCA ACGCHRNFHR
101: RRDTPENHHR SNSRPNFLSF YHSPPPSRHG AGPSSSPSPS PMSSPSPPPI SHHFPPSSHH FQGPIPAHGL LGLGNEHHHH MSFNFNSSSH WNPENSGGKK
201: RHRTKFSHEQ KEKMHNFAEK LGWRMQKGDE GLVQDFCKEI GVSRGVFKVW MHNNKNTSGR KKSLEPGERI NGTGSDSTDN NNNHPYNTNS TNDDTH

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.