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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89637
KRH01172
KRH01880
KRH05805
KRH15224
KRH18475
KRH26296
KRH26348
KRH26349
KRH40099
KRH44088
KRH50585
KRH51275
KRH51860
KRH61182
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65410.1 KRH01880 AT1G14440.1 16428600
AT5G65410.1 KRH51275 AT1G14440.1 16428600
AT5G65410.1 KRH01172 AT3G28920.1 16428600
AT5G65410.1 KRH18475 AT3G28920.1 16428600
AT5G65410.1 KRH40099 AT3G28920.1 16428600
AT5G65410.1 KRG89637 AT5G15210.1 16428600
AT5G65410.1 KRH50585 AT5G15210.1 16428600
AT5G65410.1 KRH70724 AT5G15210.1 16428600
AT5G65410.1 KRH74865 AT5G15210.1 16428600
AT5G65410.1 KRH01172 AT5G39760.1 16428600
AT5G65410.1 KRH18475 AT5G39760.1 16428600
AT5G65410.1 KRH40099 AT5G39760.1 16428600
AT5G65410.1 KRH01172 AT5G39760.1 21798944
AT5G65410.1 KRH18475 AT5G39760.1 21798944
AT5G65410.1 KRH40099 AT5G39760.1 21798944
AT5G65410.1 KRH26296 AT5G42780.1 16428600
AT5G65410.1 KRH26348 AT5G42780.1 16428600
AT5G65410.1 KRH26349 AT5G42780.1 16428600
AT5G65410.1 KRH44088 AT5G42780.1 16428600
AT5G65410.1 KRH05805 AT5G42950.1 16120600
AT5G65410.1 KRH15224 AT5G42950.1 16120600
AT5G65410.1 KRH51860 AT5G42950.1 16120600
AT5G65410.1 KRH61182 AT5G42950.1 16120600
AT5G65410.1 KRH69650 AT5G65410.1 16428600
AT5G65410.1 KRH74513 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH69650 Soybean nucleus 88.58 76.27
VIT_00s0199g00250.t01 Wine grape nucleus 64.17 66.8
Solyc04g074990.2.1 Tomato nucleus 36.61 65.03
Solyc05g051420.1.1 Tomato nucleus 42.13 64.07
PGSC0003DMT400084919 Potato nucleus 42.13 61.14
KRH45571 Soybean cytosol, nucleus 46.06 60.0
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 34.65 59.86
KRG99446 Soybean nucleus 58.66 59.6
KRH45572 Soybean nucleus 46.46 59.6
KRH45573 Soybean nucleus 45.67 58.59
GSMUA_Achr7P19060_001 Banana nucleus 46.46 57.28
PGSC0003DMT400033624 Potato nucleus 52.36 55.42
GSMUA_Achr3P20390_001 Banana nucleus 44.88 55.07
GSMUA_Achr5P05500_001 Banana nucleus 51.57 55.04
KRH16820 Soybean nucleus 55.51 54.23
PGSC0003DMT400060623 Potato nucleus 50.79 53.09
KRG90132 Soybean cytosol 42.52 52.68
GSMUA_Achr6P02170_001 Banana nucleus 47.64 52.38
Os09t0466400-01 Rice nucleus 57.48 52.33
Solyc04g014260.1.1 Tomato nucleus 50.79 52.23
Zm00001d020774_P001 Maize nucleus 55.91 52.01
GSMUA_Achr10P... Banana nucleus 46.06 51.09
KRH72430 Soybean nucleus 53.15 50.0
KRG90215 Soybean cytosol 40.94 49.06
Os08t0479400-01 Rice nucleus 55.91 48.97
GSMUA_AchrUn_... Banana nucleus 48.03 48.8
EER96888 Sorghum nucleus 57.87 48.68
KRH45574 Soybean cytosol 50.0 48.66
TraesCS5D01G253100.1 Wheat nucleus 55.91 47.97
Zm00001d005931_P001 Maize nucleus 53.94 47.9
TraesCS5B01G243800.1 Wheat nucleus 55.51 47.47
TraesCS5A01G246500.1 Wheat nucleus 55.51 47.47
KRG92484 Soybean nucleus 35.43 47.37
HORVU5Hr1G069730.1 Barley nucleus 56.3 47.35
Zm00001d031840_P001 Maize nucleus 57.09 47.08
KRH03476 Soybean cytosol 14.57 46.84
KRH56913 Soybean cytosol 14.57 46.84
KRH62204 Soybean nucleus 53.94 46.76
KRH52923 Soybean nucleus 54.72 46.64
EES15144 Sorghum nucleus 57.09 46.62
KRH71953 Soybean nucleus 46.06 45.7
KRG90213 Soybean nucleus 45.67 45.49
KRH01145 Soybean cytosol 13.39 45.33
KRG90210 Soybean nucleus 45.67 45.31
KRG90211 Soybean cytosol 45.67 45.14
KRH54551 Soybean cytosol, mitochondrion 15.75 44.94
KRH63346 Soybean cytosol, mitochondrion 15.75 44.94
KRH60587 Soybean nucleus 25.98 43.42
KRH41884 Soybean nucleus 25.98 43.42
CDY54719 Canola nucleus 40.94 43.15
KRH18477 Soybean cytosol, mitochondrion 13.78 42.68
Bra037816.1-P Field mustard nucleus 40.55 42.56
KRH71954 Soybean nucleus 41.34 42.51
CDX81284 Canola nucleus 41.73 41.57
KRG93529 Soybean cytosol, mitochondrion 15.75 41.24
CDY33960 Canola nucleus 42.52 40.15
KRH40102 Soybean cytosol, mitochondrion 11.42 39.73
Bra031859.1-P Field mustard nucleus 42.52 39.71
CDY37827 Canola nucleus 42.52 39.71
AT5G65410.1 Thale cress nucleus 43.31 39.43
KRH40100 Soybean mitochondrion 14.57 38.54
Bra024382.1-P Field mustard nucleus 43.31 37.54
CDY14559 Canola nucleus 43.31 37.54
KRH51275 Soybean nucleus 41.34 37.1
KRH01880 Soybean nucleus 40.94 36.36
KRH01146 Soybean cytosol 13.39 34.69
KRH40101 Soybean mitochondrion 12.6 32.99
KRH01171 Soybean mitochondrion 11.02 31.82
KRH48720 Soybean nucleus 27.17 31.65
KRH44088 Soybean nucleus 17.72 30.82
KRH76785 Soybean nucleus 38.19 30.6
KRH38989 Soybean nucleus, plastid 27.17 30.13
KRH74865 Soybean nucleus 33.86 29.05
KRH70724 Soybean nucleus 33.07 28.87
KRH28682 Soybean nucleus 37.8 28.57
KRH26349 Soybean nucleus 18.11 28.4
KRH18475 Soybean nucleus 35.83 27.49
KRH69909 Soybean nucleus 35.83 27.25
KRH08258 Soybean nucleus 34.25 26.44
KRH01172 Soybean nucleus 35.04 26.33
KRH40099 Soybean nucleus, plastid 30.71 25.32
KRH50585 Soybean nucleus 34.25 24.3
KRH26348 Soybean nucleus 17.72 23.68
KRH26296 Soybean nucleus 18.11 23.23
KRG89637 Soybean nucleus 16.54 23.08
Protein Annotations
Gene3D:1.10.10.60EntrezGene:100795063MapMan:15.5.3.13EMBL:ACUP02000040EnsemblPlantsGene:GLYMA_01G025000GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDUniProt:I1J527
InterPro:IPR006456EnsemblPlants:KRH74513ProteinID:KRH74513ProteinID:KRH74513.1PFAM:PD125774PFAM:PF04770
PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF44SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566
UniParc:UPI00023BB65BInterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg:::
Description
hypothetical protein
Coordinates
chr1:-:2558045..2560286
Molecular Weight (calculated)
27501.2 Da
IEP (calculated)
7.108
GRAVY (calculated)
-0.666
Length
254 amino acids
Sequence
(BLAST)
001: MEFEDQEEQE EELCMGGGAG YDPTQMKIPV AAEPVRSSSS NGGGCGRARY RECLKNHAVG IGGHALDGCG EFMAAGMEGT LDALKCAACS CHRNFHRKEA
101: DSSAVVSLSG GDPYFLPHHH HHHHPPPPQF SGYYRHPAGY LHMGGQLRSA VGGTLALPST SGGGGTQSTR EDQEDISNNP SAGGTGSKKR FRTKFTVEQK
201: DKMLELAEKL GWRIQKHDEA VVQAFCDETG VKRHVLKVWM HNNKHTLVCY NGGA
Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.