Factsheet for Solyc04g074990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033624	Potato	nucleus	95.8	57.08
GSMUA_Achr7P19060_001	Banana	nucleus	65.03	45.15
Solyc03g061620.1.1	Tomato	cytosol	27.27	44.32
Solyc03g116070.1.1	Tomato	mitochondrion	25.17	43.37
GSMUA_Achr3P20390_001	Banana	nucleus	59.44	41.06
Solyc05g051420.1.1	Tomato	nucleus	46.85	40.12
GSMUA_Achr5P05500_001	Banana	nucleus	66.43	39.92
VIT_00s0199g00250.t01	Wine grape	nucleus	67.83	39.75
GSMUA_Achr10P...	Banana	nucleus	63.64	39.74
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	27.97	39.22
Solyc02g087970.1.1	Tomato	mitochondrion	23.08	36.67
KRH74513	Soybean	nucleus	65.03	36.61
GSMUA_Achr6P02170_001	Banana	nucleus	58.74	36.36
GSMUA_AchrUn_...	Banana	nucleus	62.24	35.6
Solyc04g014260.1.1	Tomato	nucleus	58.74	34.01
Zm00001d020774_P001	Maize	nucleus	62.24	32.6
KRH69650	Soybean	nucleus	67.13	32.54
Os09t0466400-01	Rice	nucleus	62.24	31.9
Zm00001d005931_P001	Maize	nucleus	62.24	31.12
Os08t0479400-01	Rice	nucleus	62.24	30.69
EER96888	Sorghum	nucleus	63.64	30.13
Solyc03g098060.1.1	Tomato	nucleus	36.36	29.05
TraesCS5D01G253100.1	Wheat	nucleus	59.44	28.72
TraesCS5B01G243800.1	Wheat	nucleus	58.74	28.28
Zm00001d031840_P001	Maize	nucleus	60.84	28.25
HORVU5Hr1G069730.1	Barley	nucleus	59.44	28.15
EES15144	Sorghum	nucleus	60.14	27.65
TraesCS5A01G246500.1	Wheat	nucleus	57.34	27.61
Solyc01g103820.1.1	Tomato	cytosol	17.48	26.6
Solyc04g080490.2.1	Tomato	nucleus	53.85	26.55
Solyc05g018740.1.1	Tomato	cytosol	21.68	26.05
Solyc01g102980.2.1	Tomato	nucleus	52.45	25.86
Solyc01g103810.1.1	Tomato	cytosol	20.28	25.0
Solyc02g067310.2.1	Tomato	nucleus	50.35	24.66
Solyc05g020000.1.1	Tomato	cytosol	19.58	23.53
Solyc02g085160.1.1	Tomato	nucleus	46.15	22.53
Solyc05g007580.1.1	Tomato	nucleus	45.45	21.89
Solyc02g067320.1.1	Tomato	nucleus	46.85	20.24
Solyc09g089550.2.1	Tomato	nucleus	37.06	6.58

Protein Annotations

EnsemblPlants:Solyc04g074990.2.1	EnsemblPlantsGene:Solyc04g074990.2	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948	PANTHER:PTHR31948:SF44
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01566
UniParc:UPI000276586F	UniProt:K4BU37	MapMan:15.5.3.13	:	:	:

Description

No Description!

Coordinates

chr4:+:60885156..60886298

Molecular Weight (calculated)

16097.8 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.916

Length

143 amino acids

Sequence
(BLAST)

001: MEFDDDQEEQ EQEIGAVGAE NYVTTGNNSG REEGISTSSI GRKSNVRYRE CLKNHAVGIG GHALDGCGEF MPAGEEGTMD ALKCAACNCH RNFHRKEAEE
101: RLGWRMQKQD EALVQQFCAE TNVKRHVFKV WMHNNKHTLG KKP

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.