Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0466400-01 | Rice | nucleus | 77.93 | 81.0 |
| EES15144 | Sorghum | nucleus | 81.03 | 75.56 |
| Zm00001d031840_P001 | Maize | nucleus | 79.66 | 75.0 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 49.31 | 69.42 |
| VIT_18s0001g07140.t01 | Wine grape | nucleus | 52.41 | 66.09 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 50.69 | 63.64 |
| Solyc04g074990.2.1 | Tomato | nucleus | 30.69 | 62.24 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 49.31 | 58.61 |
| Solyc05g051420.1.1 | Tomato | nucleus | 33.45 | 58.08 |
| PGSC0003DMT400084919 | Potato | nucleus | 34.83 | 57.71 |
| KRH74513 | Soybean | nucleus | 48.97 | 55.91 |
| KRH45571 | Soybean | cytosol, nucleus | 37.24 | 55.38 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 27.93 | 55.1 |
| PGSC0003DMT400033624 | Potato | nucleus | 44.48 | 53.75 |
| KRG99446 | Soybean | nucleus | 46.21 | 53.6 |
| KRH45572 | Soybean | nucleus | 36.55 | 53.54 |
| KRH45573 | Soybean | nucleus | 36.55 | 53.54 |
| PGSC0003DMT400060623 | Potato | nucleus | 42.07 | 50.21 |
| Solyc04g014260.1.1 | Tomato | nucleus | 42.76 | 50.2 |
| KRG90132 | Soybean | cytosol | 34.14 | 48.29 |
| KRH69650 | Soybean | nucleus | 48.97 | 48.14 |
| KRG90215 | Soybean | cytosol | 34.48 | 47.17 |
| KRH45574 | Soybean | cytosol | 40.0 | 44.44 |
| Os08t0438100-01 | Rice | cytosol | 14.14 | 44.09 |
| Os11t0128300-01 | Rice | cytosol, plastid | 15.86 | 43.81 |
| CDY54719 | Canola | nucleus | 35.52 | 42.74 |
| KRG90210 | Soybean | nucleus | 37.59 | 42.58 |
| KRH71953 | Soybean | nucleus | 37.59 | 42.58 |
| Bra037816.1-P | Field mustard | nucleus | 35.17 | 42.15 |
| Os12t0124500-01 | Rice | cytosol, plastid | 15.17 | 41.9 |
| CDY33960 | Canola | nucleus | 38.62 | 41.64 |
| CDY37827 | Canola | nucleus | 38.97 | 41.54 |
| Bra031859.1-P | Field mustard | nucleus | 38.97 | 41.54 |
| KRH71954 | Soybean | nucleus | 35.17 | 41.3 |
| KRG90213 | Soybean | nucleus | 36.21 | 41.18 |
| AT5G65410.1 | Thale cress | nucleus | 39.31 | 40.86 |
| KRG90211 | Soybean | cytosol | 36.21 | 40.86 |
| CDX81284 | Canola | nucleus | 35.86 | 40.78 |
| CDY14559 | Canola | nucleus | 39.66 | 39.25 |
| Bra024382.1-P | Field mustard | nucleus | 39.66 | 39.25 |
| Os09t0414600-02 | Rice | nucleus | 13.79 | 36.7 |
| Os05t0579300-01 | Rice | nucleus | 31.03 | 35.29 |
| Os01t0635550-00 | Rice | nucleus | 27.93 | 34.91 |
| Os04t0434500-00 | Rice | nucleus | 31.38 | 32.04 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 24.48 | 29.83 |
| Os12t0208900-00 | Rice | nucleus | 22.07 | 28.83 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 40.69 | 28.3 |
| Os08t0438400-01 | Rice | plastid | 29.31 | 25.15 |
| Os02t0706600-00 | Rice | nucleus | 36.21 | 24.59 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:4345845 | EMBL:AK109528 | ProteinID:BAD09750.1 | ProteinID:BAF23969.1 |
| ProteinID:BAT05908.1 | ProteinID:EEE68874.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | EnsemblPlantsGene:Os08g0479400 | EnsemblPlants:Os08t0479400-01 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF25 | UniProt:Q6ZB90 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000023AF03 | RefSeq:XP_015649557.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
zinc finger homeodomain class homeobox transcription factor 2Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor. (Os08t0479400-01)
Coordinates
chr8:-:23663492..23665382
Molecular Weight (calculated)
29761.0 Da
IEP (calculated)
7.058
GRAVY (calculated)
-0.525
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDDHDEGD GDEEMPPMPL SSGYDAPMQP GLGGGGGGVP KPGGGVGGGG GGGGGGGGGG ARYRECLKNH AVGIGGHAVD GCGEFMASGE EGSIDALRCA
101: ACGCHRNFHR KESESPTGVG PAEPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQHQ MAAAAAAAAA AAAGGYPQRP LALPSTSHSG RDEGDDMSGM
201: VGPMVIGPMV GMSLGSAGPS GSGSGKKRFR TKFTQEQKDK MLAFAERLGW RIQKHDEAAV QQFCEEVCVK RHVLKVWMHN NKHTLGKKAP
101: ACGCHRNFHR KESESPTGVG PAEPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQHQ MAAAAAAAAA AAAGGYPQRP LALPSTSHSG RDEGDDMSGM
201: VGPMVIGPMV GMSLGSAGPS GSGSGKKRFR TKFTQEQKDK MLAFAERLGW RIQKHDEAAV QQFCEEVCVK RHVLKVWMHN NKHTLGKKAP
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.