Factsheet for PGSC0003DMT400084919

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009581
PGSC0003DMT400013161
PGSC0003DMT400017840
PGSC0003DMT400034368
PGSC0003DMT400035635
PGSC0003DMT400053397
PGSC0003DMT400060623
PGSC0003DMT400080288
PGSC0003DMT400083993
PGSC0003DMT400084919
PGSC0003DMT400096005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	PGSC0003DMT400053397	AT1G14440.1	16428600
AT5G65410.1	PGSC0003DMT400009581	AT1G75240.1	16428600
AT5G65410.1	PGSC0003DMT400009581	AT2G18350.1	16428600
AT5G65410.1	PGSC0003DMT400017840	AT3G28920.1	16428600
AT5G65410.1	PGSC0003DMT400034368	AT3G28920.1	16428600
AT5G65410.1	PGSC0003DMT400035635	AT3G28920.1	16428600
AT5G65410.1	PGSC0003DMT400009581	AT3G50890.1	16428600
AT5G65410.1	PGSC0003DMT400080288	AT5G15210.1	16428600
AT5G65410.1	PGSC0003DMT400017840	AT5G39760.1	16428600
AT5G65410.1	PGSC0003DMT400034368	AT5G39760.1	16428600
AT5G65410.1	PGSC0003DMT400035635	AT5G39760.1	16428600
AT5G65410.1	PGSC0003DMT400017840	AT5G39760.1	21798944
AT5G65410.1	PGSC0003DMT400034368	AT5G39760.1	21798944
AT5G65410.1	PGSC0003DMT400035635	AT5G39760.1	21798944
AT5G65410.1	PGSC0003DMT400083993	AT5G42780.1	16428600
AT5G65410.1	PGSC0003DMT400013161	AT5G42950.1	16120600
AT5G65410.1	PGSC0003DMT400060623	AT5G65410.1	16428600
AT5G65410.1	PGSC0003DMT400084919	AT5G65410.1	16428600
AT5G65410.1	PGSC0003DMT400096005	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	77.14	91.84
Solyc05g051420.1.1	Tomato	nucleus	84.57	88.62
PGSC0003DMT400060623	Potato	nucleus	64.0	46.09
VIT_00s0199g00250.t01	Wine grape	nucleus	60.57	43.44
GSMUA_Achr7P19060_001	Banana	nucleus	50.86	43.2
PGSC0003DMT400033624	Potato	nucleus	58.29	42.5
KRH74513	Soybean	nucleus	61.14	42.13
GSMUA_Achr6P02170_001	Banana	nucleus	53.71	40.69
GSMUA_Achr3P20390_001	Banana	nucleus	48.0	40.58
GSMUA_Achr5P05500_001	Banana	nucleus	53.14	39.08
GSMUA_Achr10P...	Banana	nucleus	50.86	38.86
Zm00001d020774_P001	Maize	nucleus	59.43	38.1
Os09t0466400-01	Rice	nucleus	60.0	37.63
PGSC0003DMT400083993	Potato	nucleus	38.29	37.43
PGSC0003DMT400050286	Potato	mitochondrion	17.71	37.35
Zm00001d005931_P001	Maize	nucleus	58.86	36.01
KRH69650	Soybean	nucleus	60.0	35.59
EER96888	Sorghum	nucleus	61.14	35.43
Os08t0479400-01	Rice	nucleus	57.71	34.83
TraesCS5D01G253100.1	Wheat	nucleus	57.14	33.78
CDY54719	Canola	nucleus	46.29	33.61
Bra037816.1-P	Field mustard	nucleus	46.29	33.47
TraesCS5B01G243800.1	Wheat	nucleus	56.57	33.33
GSMUA_AchrUn_...	Banana	nucleus	47.43	33.2
Zm00001d031840_P001	Maize	nucleus	58.29	33.12
HORVU5Hr1G069730.1	Barley	nucleus	57.14	33.11
TraesCS5A01G246500.1	Wheat	nucleus	56.0	33.0
EES15144	Sorghum	nucleus	57.71	32.48
CDX81284	Canola	nucleus	46.29	31.76
PGSC0003DMT400090846	Potato	cytosol	21.71	31.41
PGSC0003DMT400086860	Potato	cytosol	21.14	31.09
PGSC0003DMT400053397	Potato	nucleus	50.86	31.01
PGSC0003DMT400009581	Potato	nucleus	49.71	30.63
CDY37827	Canola	nucleus	46.86	30.15
Bra031859.1-P	Field mustard	nucleus	46.86	30.15
CDY33960	Canola	nucleus	46.29	30.11
AT5G65410.1	Thale cress	nucleus	48.0	30.11
CDY14559	Canola	nucleus	48.57	29.01
Bra024382.1-P	Field mustard	nucleus	48.57	29.01
PGSC0003DMT400080288	Potato	nucleus	42.86	26.13
PGSC0003DMT400009033	Potato	nucleus	43.43	25.17
PGSC0003DMT400035635	Potato	nucleus	44.0	25.08
PGSC0003DMT400017840	Potato	nucleus	46.29	24.62
PGSC0003DMT400034368	Potato	nucleus	48.0	24.28
PGSC0003DMT400044269	Potato	nucleus	32.57	13.6
PGSC0003DMT400044270	Potato	cytosol	32.57	7.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400084919	EnsemblPlantsGene:PGSC0003DMG400034490	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF5	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PGSC:PGSC0003DMG400034490	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002956C37	UniProt:M1D8C7	MapMan:15.5.3.13	:

Description

Zinc finger homeodomain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400034490]

Coordinates

chr5:-:46181273..46182230

Molecular Weight (calculated)

19799.9 Da

IEP (calculated)

8.767

GRAVY (calculated)

-0.625

Length

175 amino acids

Sequence
(BLAST)

001: MSKYKECLKN HAAGIGGHAV DGCGEFMPSG EDGTVDVFKC AACNCHHSFH RKETVHHHHP CGYFPYIMPR ERPLALPLTS GGTGGGFRED QELLEMCSPN
101: NNINGTLLKK RFRTKFSQEH KDKMLALAEK LGWKLQRHDE GVVQQLCNEI GIKRHVFKVW IHNNKHTLGK KLTLD

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.