Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g080490.2.1 | Tomato | nucleus | 89.44 | 87.59 |
| PGSC0003DMT400084919 | Potato | nucleus | 30.63 | 49.71 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 25.35 | 48.98 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 13.03 | 44.58 |
| CDY37252 | Canola | nucleus | 38.03 | 41.38 |
| CDY62531 | Canola | nucleus | 38.03 | 41.06 |
| PGSC0003DMT400083993 | Potato | nucleus | 25.7 | 40.78 |
| PGSC0003DMT400033624 | Potato | nucleus | 33.8 | 40.0 |
| PGSC0003DMT400060623 | Potato | nucleus | 34.15 | 39.92 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 44.37 | 39.87 |
| CDX85886 | Canola | nucleus | 39.08 | 37.76 |
| Os01t0635550-00 | Rice | nucleus | 30.63 | 37.5 |
| Bra008185.1-P | Field mustard | nucleus | 38.73 | 37.41 |
| CDX73775 | Canola | nucleus | 28.17 | 37.21 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 30.28 | 37.07 |
| CDX68137 | Canola | nucleus | 38.73 | 37.04 |
| CDX77960 | Canola | nucleus | 28.52 | 36.99 |
| Bra036852.1-P | Field mustard | nucleus | 28.52 | 36.99 |
| CDY70550 | Canola | nucleus | 33.45 | 36.97 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 30.63 | 36.86 |
| Bra003759.1-P | Field mustard | nucleus | 38.03 | 36.73 |
| AT2G18350.1 | Thale cress | nucleus | 33.8 | 36.64 |
| CDX73152 | Canola | nucleus | 38.38 | 36.45 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 28.87 | 36.44 |
| Bra015857.1-P | Field mustard | nucleus | 38.73 | 36.42 |
| CDY45419 | Canola | nucleus | 36.62 | 36.11 |
| Os05t0579300-01 | Rice | nucleus | 32.39 | 36.08 |
| CDY70108 | Canola | nucleus | 33.45 | 35.85 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 29.58 | 35.74 |
| AT3G50890.1 | Thale cress | nucleus | 31.34 | 35.74 |
| Zm00001d009674_P001 | Maize | nucleus | 29.93 | 35.56 |
| Bra037224.1-P | Field mustard | nucleus | 33.1 | 35.47 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 28.87 | 34.89 |
| PGSC0003DMT400053397 | Potato | nucleus | 35.21 | 34.84 |
| AT1G75240.1 | Thale cress | nucleus | 37.68 | 34.63 |
| CDX90679 | Canola | nucleus | 29.58 | 34.57 |
| CDY71124 | Canola | nucleus | 30.99 | 34.24 |
| CDY28987 | Canola | nucleus | 28.87 | 33.47 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 29.58 | 33.33 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 28.87 | 32.8 |
| PGSC0003DMT400009033 | Potato | nucleus | 34.86 | 32.78 |
| PGSC0003DMT400090846 | Potato | cytosol | 13.73 | 32.23 |
| GSMUA_Achr10P... | Banana | nucleus | 28.87 | 30.94 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 30.28 | 30.39 |
| PGSC0003DMT400086860 | Potato | cytosol | 12.68 | 30.25 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 30.63 | 29.9 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 32.75 | 28.97 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 33.8 | 27.67 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 32.04 | 27.58 |
| Bra012882.1-P | Field mustard | nucleus | 25.7 | 27.55 |
| PGSC0003DMT400080288 | Potato | nucleus | 27.46 | 27.18 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 30.99 | 26.59 |
| PGSC0003DMT400035635 | Potato | nucleus | 28.17 | 26.06 |
| OQU78488 | Sorghum | plastid | 32.39 | 24.66 |
| PGSC0003DMT400017840 | Potato | nucleus | 27.82 | 24.01 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 32.75 | 23.37 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 31.34 | 23.18 |
| PGSC0003DMT400034368 | Potato | nucleus | 28.17 | 23.12 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 17.96 | 22.87 |
| KXG30914 | Sorghum | nucleus | 32.39 | 22.66 |
| Zm00001d017784_P001 | Maize | nucleus | 32.39 | 22.06 |
| Os02t0706600-00 | Rice | nucleus | 32.39 | 21.55 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 17.96 | 21.25 |
| Zm00001d051573_P001 | Maize | nucleus | 32.75 | 20.85 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 32.04 | 19.74 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 32.04 | 19.57 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 32.04 | 19.57 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 30.63 | 18.87 |
| PGSC0003DMT400044269 | Potato | nucleus | 21.48 | 14.56 |
| HORVU6Hr1G069070.1 | Barley | plastid | 13.03 | 13.17 |
| PGSC0003DMT400044270 | Potato | cytosol | 23.24 | 8.15 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102594726 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M0ZWJ4 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400003736 | PGSC:PGSC0003DMG400003736 | EnsemblPlants:PGSC0003DMT400009581 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF9 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002967552 | RefSeq:XP_006341952.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003736]
Coordinates
chr4:-:69865072..69867174
Molecular Weight (calculated)
30976.4 Da
IEP (calculated)
8.835
GRAVY (calculated)
-0.856
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MELAGGEEKE MRMSGYHSLD QNIDLLSPTG GGGGGGGAAP GDGAAPHTNS TAGSNKFNKG TTTARARYRE CLKNHAANIG GNVTDGCGEF MPSGGEGTLE
101: ALKCAACNCH RNFHRKEQPN NNAGIMVVHP LQLPQSLPSP IPSLNHHHHH HHQHGGGRSI WTTMPPQPVK MAFGGSGGGS GATDSSSEEL NFNTYHHQQA
201: TSVHPQQPFM LAKKRFRTKF SQEQKEKMLE FAEKLGWRIP REDDTEVQRF CSQVGVKRQV FKVWMHNNKN PSSAKKNIIQ EDQP
101: ALKCAACNCH RNFHRKEQPN NNAGIMVVHP LQLPQSLPSP IPSLNHHHHH HHQHGGGRSI WTTMPPQPVK MAFGGSGGGS GATDSSSEEL NFNTYHHQQA
201: TSVHPQQPFM LAKKRFRTKF SQEQKEKMLE FAEKLGWRIP REDDTEVQRF CSQVGVKRQV FKVWMHNNKN PSSAKKNIIQ EDQP
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.