Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77960 | Canola | nucleus | 93.95 | 92.24 |
| CDX90679 | Canola | nucleus | 73.49 | 65.02 |
| CDY28987 | Canola | nucleus | 73.49 | 64.49 |
| AT3G50890.1 | Thale cress | nucleus | 71.16 | 61.45 |
| CDY21695 | Canola | mitochondrion | 19.07 | 46.59 |
| CDX81897 | Canola | mitochondrion | 18.6 | 45.45 |
| CDY26722 | Canola | mitochondrion | 18.14 | 44.32 |
| CDY19248 | Canola | mitochondrion | 18.14 | 44.32 |
| CDX83807 | Canola | mitochondrion | 18.14 | 44.32 |
| CDX96695 | Canola | mitochondrion | 17.67 | 43.18 |
| CDX73105 | Canola | mitochondrion | 18.14 | 41.49 |
| CDX96558 | Canola | mitochondrion | 17.67 | 40.43 |
| CDX85849 | Canola | mitochondrion | 18.14 | 40.21 |
| CDX68172 | Canola | mitochondrion | 18.14 | 40.21 |
| CDY08945 | Canola | nucleus | 37.67 | 38.57 |
| CDX85228 | Canola | mitochondrion, nucleus | 16.28 | 38.46 |
| CDX86404 | Canola | mitochondrion | 16.28 | 38.46 |
| CDY24844 | Canola | nucleus | 36.74 | 37.62 |
| CDX88950 | Canola | nucleus | 36.74 | 37.62 |
| CDY03431 | Canola | nucleus | 38.6 | 37.22 |
| CDY34299 | Canola | nucleus | 38.14 | 36.44 |
| CDY00105 | Canola | mitochondrion | 16.28 | 35.71 |
| CDY20009 | Canola | mitochondrion | 16.28 | 35.71 |
| CDY54719 | Canola | nucleus | 37.21 | 33.2 |
| CDX81284 | Canola | nucleus | 38.14 | 32.16 |
| CDX88760 | Canola | nucleus | 26.98 | 32.04 |
| CDY70550 | Canola | nucleus | 38.14 | 31.91 |
| CDY70108 | Canola | nucleus | 38.14 | 30.94 |
| CDY69628 | Canola | nucleus | 25.58 | 30.73 |
| CDY37252 | Canola | nucleus | 37.21 | 30.65 |
| CDY37827 | Canola | nucleus | 38.6 | 30.51 |
| CDY33960 | Canola | nucleus | 38.14 | 30.48 |
| CDY62531 | Canola | nucleus | 37.21 | 30.42 |
| CDX95914 | Canola | nucleus | 31.63 | 29.44 |
| Zm00001d009674_P001 | Maize | nucleus | 32.56 | 29.29 |
| CDY71124 | Canola | nucleus | 34.42 | 28.79 |
| CDX69541 | Canola | nucleus | 34.88 | 28.52 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 30.7 | 28.45 |
| Os05t0579300-01 | Rice | nucleus | 33.49 | 28.24 |
| PGSC0003DMT400009581 | Potato | nucleus | 37.21 | 28.17 |
| CDY14559 | Canola | nucleus | 38.14 | 27.99 |
| CDY20008 | Canola | nucleus | 36.28 | 27.76 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 30.23 | 27.66 |
| Os01t0635550-00 | Rice | nucleus | 29.77 | 27.59 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 36.28 | 27.56 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 28.84 | 27.56 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 30.23 | 27.54 |
| Solyc04g080490.2.1 | Tomato | nucleus | 36.74 | 27.24 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 29.77 | 27.23 |
| CDX85886 | Canola | nucleus | 37.21 | 27.21 |
| CDY45419 | Canola | nucleus | 36.28 | 27.08 |
| CDY28566 | Canola | nucleus | 32.09 | 27.06 |
| CDY44079 | Canola | nucleus | 32.09 | 27.06 |
| CDY01760 | Canola | nucleus | 32.09 | 26.95 |
| CDX68137 | Canola | nucleus | 36.74 | 26.6 |
| GSMUA_Achr10P... | Banana | nucleus | 32.56 | 26.42 |
| CDY09363 | Canola | nucleus | 36.28 | 26.17 |
| CDY41692 | Canola | nucleus | 36.28 | 26.0 |
| CDX73152 | Canola | nucleus | 35.81 | 25.75 |
| CDY00104 | Canola | nucleus | 37.21 | 25.64 |
| CDX85059 | Canola | nucleus | 28.37 | 25.63 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 37.67 | 25.23 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 36.74 | 25.0 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 29.3 | 25.0 |
| CDY46298 | Canola | cytosol | 9.77 | 25.0 |
| CDY56033 | Canola | nucleus | 32.09 | 24.91 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 28.84 | 24.8 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 33.49 | 24.74 |
| CDX74428 | Canola | nucleus | 36.28 | 24.61 |
| CDX85230 | Canola | nucleus | 37.67 | 23.89 |
| CDX86403 | Canola | nucleus | 38.14 | 23.84 |
| CDY45257 | Canola | nucleus | 33.49 | 23.15 |
| CDY53549 | Canola | nucleus | 33.49 | 22.93 |
| CDX81638 | Canola | nucleus | 33.49 | 22.86 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 34.42 | 22.36 |
| CDY39311 | Canola | nucleus | 31.63 | 22.22 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 35.81 | 22.19 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 33.02 | 21.52 |
| OQU78488 | Sorghum | plastid | 34.42 | 19.84 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 35.35 | 19.79 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 35.81 | 19.35 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 19.07 | 18.39 |
| Os02t0706600-00 | Rice | nucleus | 35.35 | 17.8 |
| Zm00001d017784_P001 | Maize | nucleus | 33.95 | 17.51 |
| KXG30914 | Sorghum | nucleus | 32.56 | 17.24 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 18.6 | 16.67 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 34.42 | 16.05 |
| Zm00001d051573_P001 | Maize | nucleus | 33.02 | 15.92 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 34.42 | 15.91 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 34.42 | 15.91 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 30.7 | 14.32 |
| HORVU6Hr1G069070.1 | Barley | plastid | 10.23 | 7.83 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078CAG2 | EnsemblPlants:CDX73775 | ProteinID:CDX73775 | ProteinID:CDX73775.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00109394001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF9 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDD7EC | InterPro:ZF_HD_homeobox_Cys/His_dimer |
Description
BnaC08g22280D
Coordinates
chrLK031799:-:2681944..2682591
Molecular Weight (calculated)
24633.9 Da
IEP (calculated)
10.249
GRAVY (calculated)
-0.891
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHGGKCNAI ASKTKISTKT LEAKPHTNSY PKAKPGSDPT LPPFLVKKEN HKLSSRGDQE TKYKECQKNH TVSTGGHVVD GCCEFMPGGK EGTLGALKCA
101: ACSCHRSFHR KEVYEHINST QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE EEIDKFCRLV NLRRQVFKVW
201: MHNNKQTMKM IGNTS
101: ACSCHRSFHR KEVYEHINST QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE EEIDKFCRLV NLRRQVFKVW
201: MHNNKQTMKM IGNTS
001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
Arabidopsis Description
ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.