Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004399.1-P | Field mustard | nucleus | 88.28 | 97.84 |
| CDX95914 | Canola | nucleus | 88.28 | 97.84 |
| CDY28566 | Canola | nucleus | 88.28 | 88.63 |
| CDY44079 | Canola | nucleus | 87.89 | 88.24 |
| AT1G69600.1 | Thale cress | nucleus | 81.64 | 86.36 |
| CDY69628 | Canola | nucleus | 37.89 | 54.19 |
| CDX88760 | Canola | nucleus | 37.11 | 52.49 |
| CDX81897 | Canola | mitochondrion | 15.23 | 44.32 |
| CDY26722 | Canola | mitochondrion | 14.84 | 43.18 |
| CDY21695 | Canola | mitochondrion | 14.84 | 43.18 |
| CDY19248 | Canola | mitochondrion | 14.84 | 43.18 |
| CDX83807 | Canola | mitochondrion | 14.45 | 42.05 |
| CDX96695 | Canola | mitochondrion | 14.06 | 40.91 |
| CDX68172 | Canola | mitochondrion | 14.84 | 39.18 |
| CDX85849 | Canola | mitochondrion | 14.84 | 39.18 |
| CDY20008 | Canola | nucleus | 42.19 | 38.43 |
| CDX73105 | Canola | mitochondrion | 14.06 | 38.3 |
| CDX96558 | Canola | mitochondrion | 14.06 | 38.3 |
| CDY34299 | Canola | nucleus | 33.2 | 37.78 |
| CDX69541 | Canola | nucleus | 38.67 | 37.64 |
| CDY08945 | Canola | nucleus | 30.86 | 37.62 |
| CDX86404 | Canola | mitochondrion | 13.28 | 37.36 |
| CDY03431 | Canola | nucleus | 32.42 | 37.22 |
| CDX88950 | Canola | nucleus | 30.47 | 37.14 |
| CDY24844 | Canola | nucleus | 30.47 | 37.14 |
| CDX85228 | Canola | mitochondrion, nucleus | 12.89 | 36.26 |
| CDY00104 | Canola | nucleus | 43.75 | 35.9 |
| CDY00105 | Canola | mitochondrion | 12.89 | 33.67 |
| CDY20009 | Canola | mitochondrion | 12.89 | 33.67 |
| CDX85059 | Canola | nucleus | 31.25 | 33.61 |
| CDY54719 | Canola | nucleus | 31.64 | 33.61 |
| CDX74428 | Canola | nucleus | 41.02 | 33.12 |
| CDY56033 | Canola | nucleus | 35.55 | 32.85 |
| CDX85230 | Canola | nucleus | 43.36 | 32.74 |
| CDX81284 | Canola | nucleus | 32.03 | 32.16 |
| CDX73775 | Canola | nucleus | 26.95 | 32.09 |
| CDX86403 | Canola | nucleus | 42.58 | 31.69 |
| CDX77960 | Canola | nucleus | 26.95 | 31.51 |
| CDY33960 | Canola | nucleus | 32.81 | 31.23 |
| CDY37827 | Canola | nucleus | 32.81 | 30.88 |
| CDY37252 | Canola | nucleus | 30.47 | 29.89 |
| CDY62531 | Canola | nucleus | 30.47 | 29.66 |
| CDX90679 | Canola | nucleus | 27.34 | 28.81 |
| CDY14559 | Canola | nucleus | 32.81 | 28.67 |
| CDY28987 | Canola | nucleus | 26.17 | 27.35 |
| CDX85886 | Canola | nucleus | 31.25 | 27.21 |
| CDY09363 | Canola | nucleus | 31.25 | 26.85 |
| CDY41692 | Canola | nucleus | 31.25 | 26.67 |
| CDX68137 | Canola | nucleus | 30.47 | 26.26 |
| CDY53549 | Canola | nucleus | 32.03 | 26.11 |
| CDY45257 | Canola | nucleus | 31.64 | 26.05 |
| CDY45419 | Canola | nucleus | 29.3 | 26.04 |
| CDX81638 | Canola | nucleus | 32.03 | 26.03 |
| CDY70550 | Canola | nucleus | 25.78 | 25.68 |
| CDY39311 | Canola | nucleus | 30.47 | 25.49 |
| CDX73152 | Canola | nucleus | 29.69 | 25.42 |
| CDY70108 | Canola | nucleus | 25.78 | 24.91 |
| CDY71124 | Canola | nucleus | 24.22 | 24.12 |
| CDY46298 | Canola | cytosol | 6.64 | 20.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078EI64 | EnsemblPlants:CDY01760 | ProteinID:CDY01760 | ProteinID:CDY01760.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00112888001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF29 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EE0D7A | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g28000D
Coordinates
chrLK031929:-:93804..94574
Molecular Weight (calculated)
27657.3 Da
IEP (calculated)
7.953
GRAVY (calculated)
-0.736
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSKHKQT LTNSPVAGEL TIAGEMGVCY KECLKNHAAN LGGHALDGCG EFMPTPTATP TDPSSLRCAA CGCHRNFHRR DPSDHLNFLP SHPTSSPSGT
101: ESPPSQSLHH VASPVPCSYY TSAPHHMLLS LSSGFPGPAD QDPTAVRSEN SSKGGMRKRT RTKFTAEQKI KMRAFAEKAG WKINGCDEKS VREFCSENGI
201: ERGVLKVWMH NNKYSLLNGK NRETLSMEDH PRLCLNTQSS NNGGEDGDNV GGSSSS
101: ESPPSQSLHH VASPVPCSYY TSAPHHMLLS LSSGFPGPAD QDPTAVRSEN SSKGGMRKRT RTKFTAEQKI KMRAFAEKAG WKINGCDEKS VREFCSENGI
201: ERGVLKVWMH NNKYSLLNGK NRETLSMEDH PRLCLNTQSS NNGGEDGDNV GGSSSS
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.