CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX90679
CDX95914
CDY01760
CDY14559
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	CDX81638	AT1G14440.1	16428600
AT3G28920.1	CDY39311	AT1G14440.1	16428600
AT3G28920.1	CDY45257	AT1G14440.1	16428600
AT3G28920.1	CDY53549	AT1G14440.1	16428600
AT3G28920.1	CDX95914	AT1G69600.1	16428600
AT3G28920.1	CDY01760	AT1G69600.1	16428600
AT3G28920.1	CDY28566	AT1G69600.1	16428600
AT3G28920.1	CDY44079	AT1G69600.1	16428600
AT3G28920.1	CDX73152	AT1G75240.1	16428600
AT3G28920.1	CDY37252	AT1G75240.1	16428600
AT3G28920.1	CDY45419	AT1G75240.1	16428600
AT3G28920.1	CDY62531	AT1G75240.1	16428600
AT3G28920.1	CDY70108	AT2G18350.1	16428600
AT3G28920.1	CDY70550	AT2G18350.1	16428600
AT3G28920.1	CDY71124	AT2G18350.1	16428600
AT3G28920.1	CDX73775	AT3G50890.1	16428600
AT3G28920.1	CDX77960	AT3G50890.1	16428600
AT3G28920.1	CDX90679	AT3G50890.1	16428600
AT3G28920.1	CDY28987	AT3G50890.1	16428600
AT3G28920.1	CDX69541	AT5G15210.1	16428600
AT3G28920.1	CDX85059	AT5G15210.1	16428600
AT3G28920.1	CDX74428	AT5G39760.1	16428600
AT3G28920.1	CDY56033	AT5G39760.1	16428600
AT3G28920.1	CDX81284	AT5G65410.1	16428600
AT3G28920.1	CDY14559	AT5G65410.1	16428600
AT3G28920.1	CDY33960	AT5G65410.1	16428600
AT3G28920.1	CDY37827	AT5G65410.1	16428600
AT3G28920.1	CDY54719	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86403	Canola	nucleus	97.94	96.51
CDY00104	Canola	nucleus	79.35	86.22
CDY20008	Canola	nucleus	71.09	85.77
AT3G28920.1	Thale cress	nucleus	76.4	83.01
CDY56033	Canola	nucleus	56.64	69.31
CDX74428	Canola	nucleus	63.72	68.14
Solyc02g067310.2.1	Tomato	nucleus	46.02	53.42
CDX69541	Canola	nucleus	41.0	52.85
KRH18475	Soybean	nucleus	50.44	51.66
KRH01172	Soybean	nucleus	51.03	51.18
CDX85059	Canola	nucleus	35.4	50.42
CDX88760	Canola	nucleus	26.84	50.28
PGSC0003DMT400035635	Potato	nucleus	45.43	50.16
VIT_14s0108g00750.t01	Wine grape	nucleus	52.21	49.86
PGSC0003DMT400034368	Potato	nucleus	50.74	49.71
Solyc02g067320.1.1	Tomato	nucleus	48.08	49.24
PGSC0003DMT400017840	Potato	nucleus	47.79	49.24
CDY69628	Canola	nucleus	25.66	48.6
CDX81897	Canola	mitochondrion	12.09	46.59
CDX95914	Canola	nucleus	31.56	46.32
CDX83807	Canola	mitochondrion	11.8	45.45
CDY26722	Canola	mitochondrion	11.8	45.45
CDY21695	Canola	mitochondrion	11.8	45.45
CDY19248	Canola	mitochondrion	11.8	45.45
KRH40099	Soybean	nucleus, plastid	40.71	44.81
CDY01760	Canola	nucleus	32.74	43.36
CDX96695	Canola	mitochondrion	11.21	43.18
CDY44079	Canola	nucleus	31.27	41.57
CDY28566	Canola	nucleus	30.97	41.18
CDX73105	Canola	mitochondrion	11.21	40.43
CDX96558	Canola	mitochondrion	10.91	39.36
CDX85849	Canola	mitochondrion	11.21	39.18
CDX68172	Canola	mitochondrion	11.21	39.18
CDY08945	Canola	nucleus	23.89	38.57
CDX86404	Canola	mitochondrion	10.32	38.46
CDY34299	Canola	nucleus	25.37	38.22
CDX88950	Canola	nucleus	23.6	38.1
CDX77960	Canola	nucleus	24.48	37.9
CDY20009	Canola	mitochondrion	10.91	37.76
CDY00105	Canola	mitochondrion	10.91	37.76
CDX73775	Canola	nucleus	23.89	37.67
CDY03431	Canola	nucleus	24.78	37.67
CDX85228	Canola	mitochondrion, nucleus	10.03	37.36
CDY24844	Canola	nucleus	23.01	37.14
CDY54719	Canola	nucleus	25.96	36.51
CDX81284	Canola	nucleus	26.25	34.9
CDY33960	Canola	nucleus	27.43	34.57
CDY37827	Canola	nucleus	27.73	34.56
CDX90679	Canola	nucleus	24.48	34.16
CDY28987	Canola	nucleus	23.89	33.06
CDY37252	Canola	nucleus	24.78	32.18
CDY14559	Canola	nucleus	27.43	31.74
CDY62531	Canola	nucleus	24.48	31.56
CDX85886	Canola	nucleus	26.55	30.61
CDY45419	Canola	nucleus	25.37	29.86
CDX73152	Canola	nucleus	25.96	29.43
CDX68137	Canola	nucleus	25.66	29.29
CDY09363	Canola	nucleus	24.78	28.19
CDY41692	Canola	nucleus	24.78	28.0
CDY70550	Canola	nucleus	20.65	27.24
CDY70108	Canola	nucleus	20.94	26.79
CDY53549	Canola	nucleus	24.78	26.75
CDX81638	Canola	nucleus	24.78	26.67
CDY71124	Canola	nucleus	20.06	26.46
CDY45257	Canola	nucleus	24.19	26.37
CDY39311	Canola	nucleus	23.3	25.82
CDY46298	Canola	cytosol	6.19	25.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:A0A078D7U5	EnsemblPlants:CDX85230	ProteinID:CDX85230	ProteinID:CDX85230.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00142868001	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF29	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0004EEDB8A	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

BnaC07g25410D

Coordinates

chrLK031841:-:503036..504055

Molecular Weight (calculated)

36691.5 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.858

Length

339 amino acids

Sequence
(BLAST)

001: MLEVGAMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHTVTV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRDPDDSSLI SAVPPPSLPP SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD LNFAANNLST HHHHNHNTPG
201: SRKRFRTKFS QTQKDKMHEF ADRIGWKIQK RDEDEVRDFC REVGVDKGVL KVWMHNNKNT FNTRRDQPFS GDTTVQKIDN GVAVSGGENI NNNNNNNNNA
301: VDVGVHGGNG LKHDLHGGDG GRFESDSGGA AANGSSSTS

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.