Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85230 | Canola | nucleus | 83.01 | 76.4 |
| Bra039038.1-P | Field mustard | nucleus | 74.68 | 75.4 |
| CDY00104 | Canola | nucleus | 75.0 | 75.0 |
| CDX86403 | Canola | nucleus | 82.37 | 74.71 |
| Bra025363.1-P | Field mustard | nucleus | 82.05 | 74.42 |
| CDY20008 | Canola | nucleus | 66.03 | 73.31 |
| AT5G39760.1 | Thale cress | nucleus | 70.83 | 66.17 |
| AT5G15210.1 | Thale cress | nucleus | 47.76 | 54.98 |
| KRH18475 | Soybean | nucleus | 55.77 | 52.57 |
| Solyc02g067310.2.1 | Tomato | nucleus | 49.04 | 52.4 |
| KRH01172 | Soybean | nucleus | 56.09 | 51.78 |
| AT1G18835.1 | Thale cress | mitochondrion | 13.78 | 48.86 |
| Solyc02g067320.1.1 | Tomato | nucleus | 51.28 | 48.34 |
| PGSC0003DMT400035635 | Potato | nucleus | 47.44 | 48.21 |
| PGSC0003DMT400034368 | Potato | nucleus | 53.21 | 47.98 |
| PGSC0003DMT400017840 | Potato | nucleus | 49.68 | 47.11 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 52.88 | 46.48 |
| KRH40099 | Soybean | nucleus, plastid | 44.55 | 45.13 |
| AT1G69600.1 | Thale cress | nucleus | 33.33 | 42.98 |
| AT5G60480.1 | Thale cress | nucleus | 28.85 | 40.36 |
| AT1G74660.1 | Thale cress | mitochondrion | 13.14 | 40.2 |
| AT3G28917.1 | Thale cress | mitochondrion | 12.5 | 39.0 |
| AT4G24660.2 | Thale cress | nucleus | 27.88 | 37.66 |
| AT5G65410.1 | Thale cress | nucleus | 29.49 | 32.97 |
| AT3G50890.1 | Thale cress | nucleus | 25.64 | 32.13 |
| AT2G18350.1 | Thale cress | nucleus | 24.68 | 29.39 |
| AT1G75240.1 | Thale cress | nucleus | 28.21 | 28.48 |
| AT1G14440.1 | Thale cress | nucleus | 27.88 | 27.88 |
| AT5G42780.1 | Thale cress | nucleus | 21.47 | 27.69 |
| AT2G02540.2 | Thale cress | nucleus | 27.24 | 27.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:822527 | ProteinID:AEE77508.1 | ArrayExpress:AT3G28920 | EnsemblPlantsGene:AT3G28920 |
| RefSeq:AT3G28920 | TAIR:AT3G28920 | RefSeq:AT3G28920-TAIR-G | EnsemblPlants:AT3G28920.1 | TAIR:AT3G28920.1 | EMBL:AY093171 |
| EMBL:AY128820 | Unigene:At.19633 | Symbol:AtHB34 | ProteinID:BAB02255.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0042803 | GO:GO:0043565 |
| GO:GO:0044212 | GO:GO:0046872 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | RefSeq:NP_189534.1 |
| PFAM:PD125774 | PFAM:PF04770 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF47 | UniProt:Q9LHF0 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000009FB3B | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
Coordinates
chr3:-:10940305..10941833
Molecular Weight (calculated)
33561.8 Da
IEP (calculated)
8.408
GRAVY (calculated)
-0.855
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.