Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027455.1-P | Field mustard | nucleus | 61.98 | 52.26 |
| AT1G18835.1 | Thale cress | mitochondrion | 15.29 | 42.05 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 25.62 | 40.0 |
| AT3G28917.1 | Thale cress | mitochondrion | 15.29 | 37.0 |
| Solyc03g098060.1.1 | Tomato | nucleus | 26.86 | 36.31 |
| PGSC0003DMT400083993 | Potato | nucleus | 26.86 | 36.31 |
| KRH44088 | Soybean | nucleus | 21.9 | 36.3 |
| AT1G74660.1 | Thale cress | mitochondrion | 14.46 | 34.31 |
| KRH26349 | Soybean | nucleus | 21.07 | 31.48 |
| AT4G24660.2 | Thale cress | nucleus | 27.69 | 29.0 |
| KRH26348 | Soybean | nucleus | 21.49 | 27.37 |
| AT1G69600.1 | Thale cress | nucleus | 26.86 | 26.86 |
| KRH26296 | Soybean | nucleus | 21.49 | 26.26 |
| AT2G18350.1 | Thale cress | nucleus | 28.1 | 25.95 |
| AT5G60480.1 | Thale cress | nucleus | 23.55 | 25.56 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 24.38 | 24.79 |
| AT3G50890.1 | Thale cress | nucleus | 25.21 | 24.5 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 23.14 | 24.24 |
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 23.14 | 23.93 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 23.14 | 23.73 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 23.14 | 23.73 |
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 23.14 | 23.73 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 23.14 | 23.33 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 23.14 | 23.33 |
| AT5G15210.1 | Thale cress | nucleus | 26.03 | 23.25 |
| AT5G65410.1 | Thale cress | nucleus | 26.03 | 22.58 |
| AT1G14440.1 | Thale cress | nucleus | 28.93 | 22.44 |
| AT1G75240.1 | Thale cress | nucleus | 28.1 | 22.01 |
| AT3G28920.1 | Thale cress | nucleus | 27.69 | 21.47 |
| AT2G02540.2 | Thale cress | nucleus | 27.27 | 21.29 |
| AT5G39760.1 | Thale cress | nucleus | 25.62 | 18.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:834288 | UniProt:A0A0G4NSG5 | UniProt:A0A178ULJ0 | ProteinID:AED94862.1 |
| ArrayExpress:AT5G42780 | EnsemblPlantsGene:AT5G42780 | RefSeq:AT5G42780 | TAIR:AT5G42780 | RefSeq:AT5G42780-TAIR-G | EnsemblPlants:AT5G42780.1 |
| TAIR:AT5G42780.1 | EMBL:AY084367 | Unigene:At.30152 | Symbol:AtHB27 | ProteinID:BAB10634.1 | EMBL:BT002832 |
| EMBL:BT004379 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042803 |
| GO:GO:0046872 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | EMBL:LN852659 | RefSeq:NP_199092.1 |
| ProteinID:OAO94420.1 | PFAM:PD125774 | PFAM:PF04770 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | UniProt:Q9FMY7 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000000BDE8 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZHD13Zinc-finger homeodomain protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMY7]
Coordinates
chr5:+:17154718..17155757
Molecular Weight (calculated)
27969.2 Da
IEP (calculated)
8.547
GRAVY (calculated)
-1.020
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEIKPKKEE NSKRRRNVKP ICRETGDHVH YLPTCKTKPK PTRTHHAPPP ILDSIFKVTH KPHYYECRKN HAADIGTTAY DGCGEFVSST GEEDSLNCAA
101: CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK
201: LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE
101: CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK
201: LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.