Factsheet for TraesCSU01G070700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G246500.1
TraesCS5B01G243800.1
TraesCS5D01G253100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42780.1	TraesCS5A01G246500.1	AT5G65410.1	16428600
AT5G42780.1	TraesCS5B01G243800.1	AT5G65410.1	16428600
AT5G42780.1	TraesCS5D01G253100.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G050800.1	Wheat	cytosol, mitochondrion, nucleus	98.31	98.31
TraesCS4A01G264100.1	Wheat	cytosol, mitochondrion, nucleus	97.88	97.88
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	94.92	93.33
EER93559	Sorghum	cytosol, mitochondrion, nucleus	76.69	77.35
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	75.0	76.62
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	76.27	75.63
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	76.69	75.42
KRH60587	Soybean	nucleus	30.51	47.37
VIT_17s0000g00810.t01	Wine grape	nucleus	30.93	47.1
KRH41884	Soybean	nucleus	29.24	45.39
PGSC0003DMT400083993	Potato	nucleus	30.93	40.78
Solyc03g098060.1.1	Tomato	nucleus	30.93	40.78
KRH48720	Soybean	nucleus	30.51	33.03
KRH38989	Soybean	nucleus, plastid	31.36	32.31
AT5G42780.1	Thale cress	nucleus	23.73	23.14
Bra027455.1-P	Field mustard	nucleus	25.0	20.56

Protein Annotations

EnsemblPlants:TraesCSU01G070700.1	EnsemblPlantsGene:TraesCSU01G070700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	ncoils:Coil
PANTHER:PTHR31948	PANTHER:PTHR31948:SF16	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	MapMan:15.5.3.13	:	:

Description

No Description!

Coordinates

chrUn:-:61039363..61040073

Molecular Weight (calculated)

24699.0 Da

IEP (calculated)

8.037

GRAVY (calculated)

-0.700

Length

236 amino acids

Sequence
(BLAST)

001: MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR KAFLDGAASP GAASQHAPLM LPSPGAPPGY MHHHLAMAGP
101: SGVAMGGGDG GGDGGGSHSG GGSRRRTRTK FTDEQKARML RFAERLGWRM PKREPGRAPG DDEVARFCRE IGVTRQVFKV WMHNHKAGVG GSGGAGAQTS
201: SSTTRGGGGG GAGGMSPAMG GDGEDDEEVR GSEMCM

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.