CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96888
EES15144

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42780.1	EER96888	AT5G65410.1	16428600
AT5G42780.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	90.17	87.92
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	86.75	87.88
TraesCS4B01G050800.1	Wheat	cytosol, mitochondrion, nucleus	77.78	77.12
TraesCS4A01G264100.1	Wheat	cytosol, mitochondrion, nucleus	77.78	77.12
TraesCSU01G070700.1	Wheat	cytosol, mitochondrion, nucleus	77.35	76.69
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	77.35	75.42
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	74.36	73.11
KRH60587	Soybean	nucleus	30.77	47.37
VIT_17s0000g00810.t01	Wine grape	nucleus	29.91	45.16
KRH41884	Soybean	nucleus	29.06	44.74
Solyc03g098060.1.1	Tomato	nucleus	30.34	39.66
PGSC0003DMT400083993	Potato	nucleus	30.34	39.66
KRH48720	Soybean	nucleus	30.34	32.57
KRH38989	Soybean	nucleus, plastid	30.77	31.44
EES07913	Sorghum	cytosol	12.82	30.61
EES16563	Sorghum	cytosol	11.97	30.43
KXG35630	Sorghum	nucleus	12.39	26.36
AT5G42780.1	Thale cress	nucleus	23.93	23.14
EER96888	Sorghum	nucleus	29.49	22.85
EES15144	Sorghum	nucleus	30.34	22.83
KXG23238	Sorghum	nucleus	31.62	22.56
OQU86730	Sorghum	nucleus	25.21	22.26
KXG25227	Sorghum	mitochondrion	11.97	22.05
OQU78488	Sorghum	plastid	32.91	20.64
KXG35632	Sorghum	nucleus	32.91	20.21
Bra027455.1-P	Field mustard	nucleus	24.36	19.86
KXG28111	Sorghum	nucleus	33.33	19.8
EES15050	Sorghum	cytosol	31.62	18.97
KXG30914	Sorghum	nucleus	29.06	16.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:8060001	UniProt:C5WMZ9	EnsemblPlants:EER93559	ProteinID:EER93559
ProteinID:EER93559.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF16	EnsemblPlantsGene:SORBI_3001G112500	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0001A82838
RefSeq:XP_002466561.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8818579..8819909

Molecular Weight (calculated)

24355.7 Da

IEP (calculated)

8.031

GRAVY (calculated)

-0.585

Length

234 amino acids

Sequence
(BLAST)

001: MDQQQHQERP REVYRECMRN HAAKLGTYAS DGCCEYTPDD GQPAAMLCAA CGCHRNFHRK AFVDAAAGAH VGGGGGAHGA MLPSPGVSPG YGMHHMAITA
101: AGMGGGDAGG SGGSRRRTRT KFTEEQKERM ARFAERLGWR MPKREPGRAP GDDEVGRFCR EIGVTRQVFK VWMHNHKAGV GGSGGAGVGG AAQTSSSTTR
201: GGGVGVVGAG GSLSPAMGAD VEDDEEVKGS EMCM

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.