CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	KXG23238	AT1G14440.1	16428600
AT1G14440.1	KXG28111	AT1G14440.1	16428600
AT1G14440.1	KXG30914	AT1G75240.1	16428600
AT1G14440.1	OQU78488	AT1G75240.1	16428600
AT1G14440.1	KXG30914	AT2G18350.1	16428600
AT1G14440.1	OQU78488	AT2G18350.1	16428600
AT1G14440.1	KXG30914	AT3G50890.1	16428600
AT1G14440.1	OQU78488	AT3G50890.1	16428600
AT1G14440.1	EES15050	AT5G15210.1	16428600
AT1G14440.1	KXG35632	AT5G15210.1	16428600
AT1G14440.1	OQU86730	AT5G15210.1	16428600
AT1G14440.1	EER96888	AT5G65410.1	16428600
AT1G14440.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041780_P001	Maize	nucleus	82.32	77.36
Os12t0208900-00	Rice	nucleus	37.5	55.41
GSMUA_Achr6P28870_001	Banana	nucleus	36.89	53.54
GSMUA_Achr3P16680_001	Banana	nucleus	37.2	52.36
GSMUA_Achr1P13300_001	Banana	nucleus	35.98	52.21
GSMUA_Achr6P17420_001	Banana	nucleus	32.93	52.17
GSMUA_Achr10P...	Banana	nucleus	37.8	51.24
GSMUA_Achr9P08090_001	Banana	nucleus	37.5	51.04
KRG92484	Soybean	nucleus	29.27	50.53
EES16563	Sorghum	cytosol	11.28	40.22
KXG28111	Sorghum	nucleus	48.17	40.1
EER96888	Sorghum	nucleus	35.98	39.07
EES15144	Sorghum	nucleus	36.28	38.26
Solyc01g102980.2.1	Tomato	nucleus	33.54	37.93
EES07913	Sorghum	cytosol	11.28	37.76
PGSC0003DMT400053397	Potato	nucleus	32.93	37.63
VIT_07s0130g00240.t01	Wine grape	nucleus	20.43	33.84
CDX81638	Canola	nucleus	32.32	33.65
CDY09363	Canola	nucleus	30.49	33.56
Bra026830.1-P	Field mustard	nucleus	32.01	33.44
CDY53549	Canola	nucleus	32.01	33.44
Bra026589.1-P	Field mustard	nucleus	30.49	33.33
CDY41692	Canola	nucleus	30.49	33.33
AT1G14440.1	Thale cress	nucleus	31.4	33.01
Bra026219.1-P	Field mustard	nucleus	31.1	32.9
CDY45257	Canola	nucleus	31.1	32.8
EER93559	Sorghum	cytosol, mitochondrion, nucleus	22.56	31.62
CDY39311	Canola	nucleus	29.27	31.37
AT2G02540.2	Thale cress	nucleus	29.57	31.29
KXG35630	Sorghum	nucleus	10.37	30.91
KXG25227	Sorghum	mitochondrion	10.67	27.56
OQU86730	Sorghum	nucleus	21.65	26.79
OQU78488	Sorghum	plastid	29.88	26.27
KXG30914	Sorghum	nucleus	29.57	23.89
EES15050	Sorghum	cytosol	27.74	23.33
KXG35632	Sorghum	nucleus	26.52	22.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:8083097	UniProt:C5YTM1	ProteinID:EES16861.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
EnsemblPlants:KXG23238	ProteinID:KXG23238	ProteinID:KXG23238.1	ProteinID:OQU78928.1	ProteinID:OQU78929.1	ProteinID:OQU78930.1
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF19	EnsemblPlantsGene:SORBI_3008G073200
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0001A88134	RefSeq:XP_002443023.1	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:10156190..10159500

Molecular Weight (calculated)

34726.9 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.789

Length

328 amino acids

Sequence
(BLAST)

001: MDLSGTQGEL PMAMHAGGGG GGSPYLGLHH GHHEQQHNHG ANGRHMSPPD VVAEEAKNRQ LAVVPVSGAG GGGGAGVRYR ECLKNHAAAI GGSATDGCGE
101: FMPAGEEGSL DALRCSACGC HRNFHRKEPP GGGGGGDARQ LHGHGHHHHH HHPLSPLSPL AAAHHHRGLL VAALPPAPTR MVMPLSAMHH QQQHHNSSAS
201: AESDDAHNAP GHAHGQQQGP PARKRFRTKF TAEQKARMLG FAEEAGWRLQ KLDDAAVQRF CQEVGVKRRV LKVWMHNNKH TLARRGHDGV GDPQQQGPHG
301: GQLGMPLPEP GGPGRSPSRS PPPQLRLE

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.