Factsheet for VIT_07s0130g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92484	Soybean	nucleus	40.4	42.11
VIT_12s0035g01880.t01	Wine grape	nucleus	46.46	32.74
VIT_18s0001g07140.t01	Wine grape	nucleus	37.37	32.17
VIT_00s0199g00250.t01	Wine grape	nucleus	37.37	30.33
VIT_17s0000g00810.t01	Wine grape	nucleus	21.21	27.1
VIT_10s0042g00210.t01	Wine grape	nucleus	26.77	26.37
Os12t0208900-00	Rice	nucleus	28.79	25.68
VIT_18s0117g00270.t01	Wine grape	nucleus	32.83	23.9
VIT_01s0026g02460.t01	Wine grape	nucleus	26.26	22.61
VIT_18s0001g12580.t01	Wine grape	nucleus	34.85	21.84
KXG23238	Sorghum	nucleus	33.84	20.43
TraesCS4D01G086300.1	Wheat	nucleus	37.88	19.28
Zm00001d041780_P001	Maize	nucleus	33.84	19.2
VIT_14s0108g00750.t01	Wine grape	nucleus	34.34	19.15
TraesCS4B01G089700.1	Wheat	nucleus	37.88	18.89
KXG28111	Sorghum	nucleus	36.87	18.53
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	38.89	18.47
TraesCS4A01G226800.1	Wheat	nucleus	37.37	18.45
HORVU4Hr1G015250.6	Barley	nucleus, plastid	36.36	17.14
Zm00001d049000_P001	Maize	plastid	36.36	17.14
VIT_14s0108g00760.t01	Wine grape	mitochondrion	7.58	15.79
VIT_01s0026g02450.t01	Wine grape	cytosol	6.57	15.29
VIT_04s0023g01880.t01	Wine grape	nucleus	31.31	14.32
VIT_17s0000g06200.t01	Wine grape	cytosol	3.03	12.24
VIT_14s0108g00810.t01	Wine grape	cytosol	7.58	11.63
VIT_08s0056g01130.t01	Wine grape	nucleus	5.05	7.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	ProteinID:CCB51339	ProteinID:CCB51339.1	UniProt:F6HGJ3	EMBL:FN595755
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:Homeodomain_ZF_HD	InterPro:IPR001356
PFscan:PS50071	PANTHER:PTHR31948	PANTHER:PTHR31948:SF29	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	UniParc:UPI000210AA3E
ArrayExpress:VIT_07s0130g00240	EnsemblPlantsGene:VIT_07s0130g00240	EnsemblPlants:VIT_07s0130g00240.t01	:	:	:

Description

No Description!

Coordinates

chr7:-:20539010..20539762

Molecular Weight (calculated)

22414.6 Da

IEP (calculated)

10.381

GRAVY (calculated)

-1.018

Length

198 amino acids

Sequence
(BLAST)

001: MSISRQQVEV QVPKTSSTHT RGNGHDDESP SPSPPFKGGM HQTYKKAATE GEFSYTFGHL QPLNNTERKL ILGHHNKPIM GTKSIEYPTG TLVSSRAAAP
101: QHMIMGSIPS ESDEQEEIGR GGPKPSSDQQ VKKRFRTKFT QEQKEKMLSF AERAGWRIQK QEESLVQQFC QEIGIKRRVL KVWMHNNKNL ARKNPSTD

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.